Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

added epilog documentation for <base>.dist file produced by extract-part... #516

Merged
merged 2 commits into from
Jul 1, 2014
Merged

added epilog documentation for <base>.dist file produced by extract-part... #516

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
efd2c6f
added epilog documentation for <base>.dist file produced by extract-p…
chuckpr Jun 30, 2014
18f49fd
ChangLog entry for extract-partitions.py epilog additions re: <base>.…
chuckpr Jun 30, 2014
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
5 changes: 5 additions & 0 deletions ChangeLog
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,3 +1,8 @@
2014-06-20 Chuck Pepe-Ranney <chuck.peperanney@gmail.com>

* scripts/extract-partitions.py: added epilog documentation for
<base>.dist columns.

2014-06-20 Michael R. Crusoe <mcrusoe@msu.edu>

* doc/release.txt: Add Coverity Scan to release checklist
Expand Down
5 changes: 5 additions & 0 deletions scripts/extract-partitions.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -54,6 +54,11 @@ def get_parser():
merge-partitions.py -k 20 example
annotate-partitions.py -k 20 example tests/test-data/random-20-a.fa
extract-partitions.py example random-20-a.fa.part

(extract-partitions.py will produce a partition size distribution
in <base>.dist. The columns are: (1) number of reads, (2) count
of partitions with n reads, (3) cumulative sum of partitions,
(4) cumulative sum of reads.)
"""
parser = argparse.ArgumentParser(
description="Separate sequences that are annotated with partitions "
Expand Down