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add script for benchmarking & benchmark results #10

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merged 5 commits into from
Aug 3, 2022
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@guolinke guolinke commented Aug 2, 2022

N_seq = 256, N_msa = 128, A100 40GB

Method Forward Time Backward Time Peak Memory at Training
openfold 17.198 ms 23.703 ms 8.079 GB
openfold with LMA 20.906 ms 39.007 ms 8.552 GB
fastfold 9.415 ms 20.247 ms 7.814 GB
unifold 8.440 ms 18.472 ms 7.669 GB

@ZiyaoLi ZiyaoLi merged commit 5d52fbf into main Aug 3, 2022
@guolinke guolinke deleted the guolin/benchmark branch August 5, 2022 02:46
teslacool pushed a commit to teslacool/Uni-Fold that referenced this pull request Feb 27, 2023
* add script for benchmarking

* code clean

* add benchmark in memory cost

* remove use_lma

* add option for LMA
hypnopump pushed a commit to hypnopump/Uni-Fold that referenced this pull request Dec 21, 2023
* add script for benchmarking

* code clean

* add benchmark in memory cost

* remove use_lma

* add option for LMA
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2 participants