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Macro: Support of unsplit nucleotides #4382
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feature request
IDT
Bucket: IDT related issues
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rrodionov91
modified the milestones:
Macromolecules Backlog,
Ketcher 2.22.0-rc.1,
Ketcher 2.23.0-rc.1
Apr 18, 2024
Attached files with examples suitable for testing |
Unsplit nucleotides is a new entity, it's like CHEMS, only different Questions to @olganaz
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Labels
feature request
IDT
Bucket: IDT related issues
Test Cases Written
Test cases has been written for that issue
Background
In some cases there is no need to divide modified nucleotides to submonomers (sugar, base, phosphate). Such nucleotides should be supported as single monomers.
Requirements
Unsplit nucleotides are nucleotides which have chemical structure, but submonomers (sugar, base, phosphate) are not specified
Additional chapter 'Nucleotides' should be introduced in a RNA tab of Ketcher library
Unsplit nucleotides should have base natural analog
Unsplit nucleotides should be grouped by natural analog in a library.
- Nucleotides, for which a natural analogue is not specified, should be grouped in a separate section in a library ("No natural analogue")
Unsplit nucleotides should not interrupt enumeration of RNA chain in flex mode
Unsplit nucleotides should be displayed:
On preview chemical structure together with name and IDT alias should be displayed.
Establishing connections between unsplit nucleotides should be performed as for peptide monomers (center-to-center, center-to-point , point-to-center, point-to-point).
Examples
Unsplit_nucleotides.zip
iAmMC6T.zip - has 4 AP
UX
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