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Support of ambiguous monomers in sequence view #4556

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olganaz opened this issue Apr 30, 2024 · 2 comments · Fixed by #5378
Closed

Support of ambiguous monomers in sequence view #4556

olganaz opened this issue Apr 30, 2024 · 2 comments · Fixed by #5378
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@rrodionov91
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feature request Macromolecules Requirements Done Test Cases Written Test cases has been written for that issue variant_monomers
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Ketcher 2.25.0-rc.1

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@olganaz
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olganaz commented Apr 30, 2024 •
edited by ljubica-milovic
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Background
Support for ambiguous monomers in sequence mode (X, N, etc.)

Requirements

  1. Ambiguous monomers with a letter symbol (R, Y, M, K, S, W, H, B, V, D and N for RNA/DNA, and B, J, Z and X for peptides; see: #2015) should be represented as those symbols in sequence mode.
  2. Other ambiguous monomers should be displayed as % in sequence mode.
  3. Previews for hovering over the monomers in sequence mode are addressed in the related issue: #4555.

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@rrodionov91 rrodionov91 added this to the Ketcher 2.25.0-rc.1 milestone Jul 22, 2024
@AlexeyGirin AlexeyGirin added the Test Cases Written Test cases has been written for that issue label Aug 13, 2024
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Test cases added

@ljubica-milovic ljubica-milovic changed the title Macro: Support of variant monomers in sequence view Macro: Support of ambiguous monomers in sequence view Aug 26, 2024
@rrodionov91 rrodionov91 changed the title Macro: Support of ambiguous monomers in sequence view Support of ambiguous monomers in sequence view Aug 28, 2024
rrodionov91 added a commit that referenced this issue Aug 28, 2024
@rrodionov91
#4556 - Support of ambiguous monomers in sequence view
0d098cf
@rrodionov91 rrodionov91 linked a pull request Aug 28, 2024 that will close this issue
#4556 - Support of ambiguous monomers in sequence view #5378
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svvald pushed a commit that referenced this issue Aug 28, 2024
@rrodionov91
#4556 - Support of ambiguous monomers in sequence view (#5378)
c2227cf
This was referenced Sep 4, 2024
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@AlexeyGirin
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Verified.
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Versions

  • Ketcher Version 2.25.0-rc.1 Build at 2024-09-03; 15:31:03
  • Indigo Toolkit Version 1.24.0-rc.1.0-gb8f099851-wasm32-wasm-clang-19.0.0
  • Chrome Version 128.0.6613.114 (Official Build) (64-bit)
  • Win10

This was referenced Sep 24, 2024
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@AlinaLysenko AlinaLysenko mentioned this issue Sep 27, 2024
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This was referenced Oct 14, 2024
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@AlexeyGirin AlexeyGirin mentioned this issue Oct 14, 2024
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Guch1g0v pushed a commit that referenced this issue Oct 17, 2024
@rrodionov91 @Guch1g0v
#4556 - Support of ambiguous monomers in sequence view (#5378)
6a602db
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feature request Macromolecules Requirements Done Test Cases Written Test cases has been written for that issue variant_monomers
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Ketcher 2.25.0-rc.1
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Successfully merging a pull request may close this issue.

#4556 - Support of ambiguous monomers in sequence view epam/ketcher
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@rrodionov91 @AlexeyGirin @Andrey-Antonov @olganaz @ljubica-milovic