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fixes to load properly VCF samples dict from _samples.avro #9

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fixes to load properly VCF samples dict from _samples.avro #9

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Commits on May 20, 2016

  1. [ADAM-909] Refactoring variation RDDs. 

    Resolves bigdatagenomics#909:

* Refactors `org.bdgenomics.adam.rdd.variation` to add `GenomicRDD`s for
  `Genotype`, `Variant`, and `VariantContext`. These classes write
  sequence and sample metadata to disk.
* Refactors `ADAMRDDFunctions` to an abstract class in preparation for
  further refactoring in bigdatagenomics#1011.
* Added `AvroGenomicRDD` trait which consolidates Parquet + Avro metadata
  writing code across all Avro data models.
    @fnothaft
    fnothaft committed May 20, 2016
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  2. Upgrading to bdg-formats 0.8.0

    @fnothaft
    fnothaft committed May 20, 2016
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  3. Fixes for unittest issues.

    @fnothaft
    fnothaft committed May 20, 2016
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Commits on May 25, 2016

  1. fixes to load properly VCF samples dict from _samples.avro

    @jpdna
    jpdna committed May 25, 2016
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