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Use regions in illumination correction #79

Merged
merged 22 commits into from
Sep 19, 2022
Merged

Use regions in illumination correction #79

merged 22 commits into from
Sep 19, 2022

Commits on Sep 15, 2022

  1. Setup Sandbox for testing in #75

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    tcompa committed Sep 15, 2022
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  2. Improve Sandbox for #75

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    tcompa committed Sep 15, 2022
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  3. Rename Sandbox_zarr_regions scripts

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    tcompa committed Sep 15, 2022
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  4. In sanbox, add run_example_v2_22G.py (ref #75)

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  5. Update Sandbox - ref #75

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    tcompa committed Sep 15, 2022
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  6. Simplify testing Sandbox #75

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  7. Simplify Sandbox #75

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  8. BROKEN v0 for use of regions in illumination correction (#75)

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    tcompa committed Sep 15, 2022
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Commits on Sep 16, 2022

  1. Update illumination correction to scan ROIs sequentially - ref #75

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    tcompa committed Sep 16, 2022
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  2. Simplify ROI loops in illumination correction #75

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    tcompa committed Sep 16, 2022
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  3. Put back overwrite=True option in illumination_correction #75

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    tcompa committed Sep 16, 2022
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  4. Fix comment

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    tcompa committed Sep 16, 2022
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  5. Update Sandbox for #75

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    tcompa committed Sep 16, 2022
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Commits on Sep 19, 2022

  1. Add build_pyramid function, and include it in illumination_correction… 

    … (ref #75)
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    tcompa committed Sep 19, 2022
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  2. Fix test for illumination correction (new task has 3D FOVs) - ref #75

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    tcompa committed Sep 19, 2022
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  3. Minor cleanups in #75

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    tcompa committed Sep 19, 2022
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  4. Merge branch 'main' into 75_zarr_regions (new yokogawa_to_zarr, using… 

    … zarr regions)
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    tcompa committed Sep 19, 2022
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  5. Skip a test

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    tcompa committed Sep 19, 2022
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  6. Do not support overwrite=False in illumination_correction (#75)

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    tcompa committed Sep 19, 2022
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  7. Add dimension_separator in to_zarr in build_pyramid

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    tcompa committed Sep 19, 2022
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  8. Add example and cleanup pyramid

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    tcompa committed Sep 19, 2022
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  9. Update yokogawa_to_zarr, with new build_pyramid function and by movin… 

    …g get_ROIs_bounding_box (ref #8) to lib_regions_of_interest
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    tcompa committed Sep 19, 2022
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