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Issues list

Review image-plate attribute of MIP task
#841 opened Sep 19, 2024 by tcompa
1
Make projection task work with zyx data
#840 opened Sep 17, 2024 by jluethi
1
Reduce dependency on pydantic._internal dependencies Pull requests that update a dependency file JSON Schemas
#835 opened Sep 9, 2024 by tcompa
1
Move to anndata 0.11 dependencies Pull requests that update a dependency file Tables AnnData and ROI/feature tables
#833 opened Sep 4, 2024 by tcompa
Napari-workflows tests fail with stacview 0.9.0 dependencies Pull requests that update a dependency file
#827 opened Aug 30, 2024 by tcompa
4
Review "UserWarning: Pydantic serializer warnings: Expected int but got int64" in cellvoyager-to-ome-zarr init task Backlog Backlog issues we may eventually fix, but aren't a priority
#824 opened Aug 29, 2024 by tcompa
Update zenodo dataset, setting channel.active to True Converters ngio
#823 opened Aug 28, 2024 by tcompa
3
Relax numpy dependency to <=2.1.0 dependencies Pull requests that update a dependency file
#821 opened Aug 27, 2024 by tcompa
2
Ensure correct ordering of acquisition in multiplexing converter
#819 opened Aug 21, 2024 by jluethi
@jluethi
Allow overwrite of existing image in apply registration
#800 opened Jul 16, 2024 by jluethi
@jluethi
[ngio] Refactor masked_loading_wrapper logic to do relabeling in the masking step ngio
#787 opened Jul 12, 2024 by jluethi
1
Review/optimize use of get_overlapping_pairs_3D in Cellpose task Backlog Backlog issues we may eventually fix, but aren't a priority performance testing
#779 opened Jul 3, 2024 by tcompa
3
ROI upsampling issue when original image resolution is not divisible by 2 ngio
#771 opened Jun 26, 2024 by jluethi
Verify compatibility with Python 3.12 dependencies Pull requests that update a dependency file testing
#770 opened Jun 26, 2024 by tcompa
2
Doc updates documentation Improvements or additions to documentation
#766 opened Jun 17, 2024 by tcompa
[cellpose segmentation task] label or wavelength_id for ChannelInputModel
#762 opened Jun 11, 2024 by BioinfoTongLI
1
Possible path towards improvements of tasks JSON schemas JSON Schemas
#758 opened Jun 10, 2024 by tcompa
1
Allow conditional fields & either/or logic JSON Schemas
#756 opened Jun 7, 2024 by jluethi
2
Allow developers to influence schema building in finer detail JSON Schemas
#755 opened Jun 7, 2024 by jluethi
1
Make Cellpose task work for OME-Zarrs without pyramids good first issue maintenance
#742 opened May 18, 2024 by BioinfoTongLI
4
Centralize copying of tables functionality ngio OME-Zarr reader/writer
#725 opened Apr 24, 2024 by jluethi
Drop image list updates with only updated_images_urls good first issue
#721 opened Apr 24, 2024 by jluethi
Enable other packages reusing tasks from fractal-tasks-core compound tasks
#704 opened Apr 15, 2024 by jluethi
3
Add unit tests for fractal_tasks_core/tasks/copy_ome_zarr_hcs_plate.py helper functions testing
#696 opened Apr 11, 2024 by tcompa
In calculate_registration_image_based, should we check that zarr_url != reference_zarr_url? fractal_v2
#695 opened Apr 11, 2024 by tcompa
1
ProTip! no:milestone will show everything without a milestone.