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[auto] Update dependencies in poetry.lock #830

Merged
merged 2 commits into from
Sep 3, 2024
Merged

[auto] Update dependencies in poetry.lock #830

merged 2 commits into from
Sep 3, 2024

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tcompa
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@tcompa tcompa commented Sep 3, 2024

Updated dependencies:

Updating dependencies
Resolving dependencies...

Package operations: 0 installs, 1 update, 0 removals

  - Updating anndata (0.10.8 -> 0.10.9)

Writing lock file

Outdated dependencies before PR:

alabaster                  (!) 0.7.16              1.0.0             
anndata                        0.10.8              0.10.9            
astropy                    (!) 6.0.1               6.1.3             
astropy-iers-data          (!) 0.2024.8.26.0.31.57 0.2024.9.2.0.33.23
cellpose                   (!) 2.2.3               3.0.11            
certifi                    (!) 2024.7.4            2024.8.30         
contourpy                  (!) 1.2.1               1.3.0             
dask                           2024.8.0            2024.8.2          
docstring-parser               0.15                0.16              
executing                  (!) 0.10.0              2.1.0             
filelock                       3.13.4              3.15.4            
freetype-py                (!) 2.4.0               2.5.1             
httpx                      (!) 0.27.0              0.27.2            
imageio-ffmpeg             (!) 0.4.9               0.5.1             
ipython                    (!) 8.18.1              8.27.0            
jupyter                    (!) 1.0.0               1.1.1             
lxml                           4.9.4               5.3.0             
napari                     (!) 0.5.2               0.5.3             
napari-skimage-regionprops (!) 0.8.2               0.10.1            
networkx                   (!) 3.2.1               3.3               
numcodecs                      0.12.1              0.13.0            
numpy                          1.26.4              2.1.0             
nvidia-cublas-cu11         (!) 11.10.3.66          11.11.3.6         
nvidia-cuda-cupti-cu11     (!) 11.7.101            11.8.87           
nvidia-cuda-nvrtc-cu11     (!) 11.7.99             11.8.89           
nvidia-cuda-runtime-cu11   (!) 11.7.99             11.8.89           
nvidia-cudnn-cu11          (!) 8.5.0.96            9.3.0.75          
nvidia-curand-cu11         (!) 10.2.10.91          10.3.0.86         
nvidia-cusolver-cu11       (!) 11.4.0.1            11.4.1.48         
nvidia-cusparse-cu11       (!) 11.7.4.91           11.7.5.86         
nvidia-nccl-cu11           (!) 2.14.3              2.21.5            
nvidia-nvtx-cu11           (!) 11.7.91             11.8.86           
pandas                         1.5.3               2.2.2             
pooch                      (!) 1.8.0               1.8.2             
pydantic-core                  2.20.1              2.23.1            
pytest                     (!) 7.4.4               8.3.2             
qtconsole                  (!) 5.5.2               5.6.0             
scipy                          1.13.1              1.14.1            
setuptools                     73.0.1              74.1.0            
sphinx                     (!) 7.4.7               8.0.2             
stack-data                 (!) 0.5.1               0.6.3             
stackview                  (!) 0.8.2               0.9.1             
tifffile                   (!) 2024.8.24           2024.8.30         
torch                      (!) 2.0.0               2.4.0             
triton                     (!) 2.0.0               3.0.0             

Outdated dependencies after PR:

alabaster                  (!) 0.7.16     1.0.0     A light, configurable Sp...
astropy                    (!) 6.0.1      6.1.3     Astronomy and astrophysi...
cellpose                   (!) 2.2.3      3.0.11    anatomical segmentation ...
dask                           2024.8.0   2024.8.2  Parallel PyData with Tas...
docstring-parser               0.15       0.16      Parse Python docstrings ...
executing                  (!) 0.10.0     2.1.0     Get the currently execut...
filelock                       3.13.4     3.15.4    A platform independent f...
imageio-ffmpeg             (!) 0.4.9      0.5.1     FFMPEG wrapper for Python
ipython                    (!) 8.18.1     8.27.0    IPython: Productive Inte...
lxml                           4.9.4      5.3.0     Powerful and Pythonic XM...
napari-skimage-regionprops (!) 0.8.2      0.10.1    A regionprops table widg...
networkx                   (!) 3.2.1      3.3       Python package for creat...
numcodecs                      0.12.1     0.13.0    A Python package providi...
numpy                          1.26.4     2.1.0     Fundamental package for ...
nvidia-cublas-cu11         (!) 11.10.3.66 11.11.3.6 CUBLAS native runtime li...
nvidia-cuda-cupti-cu11     (!) 11.7.101   11.8.87   CUDA profiling tools run...
nvidia-cuda-nvrtc-cu11     (!) 11.7.99    11.8.89   NVRTC native runtime lib...
nvidia-cuda-runtime-cu11   (!) 11.7.99    11.8.89   CUDA Runtime native Libr...
nvidia-cudnn-cu11          (!) 8.5.0.96   9.3.0.75  cuDNN runtime libraries
nvidia-curand-cu11         (!) 10.2.10.91 10.3.0.86 CURAND native runtime li...
nvidia-cusolver-cu11       (!) 11.4.0.1   11.4.1.48 CUDA solver native runti...
nvidia-cusparse-cu11       (!) 11.7.4.91  11.7.5.86 CUSPARSE native runtime ...
nvidia-nccl-cu11           (!) 2.14.3     2.21.5    NVIDIA Collective Commun...
nvidia-nvtx-cu11           (!) 11.7.91    11.8.86   NVIDIA Tools Extension
pandas                         1.5.3      2.2.2     Powerful data structures...
pooch                      (!) 1.8.0      1.8.2     "Pooch manages your Pyth...
pydantic-core                  2.20.1     2.23.1    Core functionality for P...
pytest                     (!) 7.4.4      8.3.2     pytest: simple powerful ...
scipy                          1.13.1     1.14.1    Fundamental algorithms f...
sphinx                     (!) 7.4.7      8.0.2     Python documentation gen...
stack-data                 (!) 0.5.1      0.6.3     Extract data from python...
stackview                  (!) 0.8.2      0.9.1     Interactive image stack ...
torch                      (!) 2.0.0      2.4.0     Tensors and Dynamic neur...
triton                     (!) 2.0.0      3.0.0     A language and compiler ...

Note: there may be dependencies in the table above which were not updated as part of this PR.
The reason is they require manual updating due to the way they are pinned.

@tcompa tcompa marked this pull request as ready for review September 3, 2024 15:08
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github-actions bot commented Sep 3, 2024

Coverage report

This PR does not seem to contain any modification to coverable code.

@tcompa tcompa merged commit af7ec05 into main Sep 3, 2024
19 checks passed
@tcompa tcompa deleted the poetry-update branch September 3, 2024 15:16
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