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Refactor of VariantLookup and related code #115

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Refactor of VariantLookup and related code #115

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02eef50
Cleanup of VariantLooup and related code.
tfenne Jan 17, 2025
7d76a43
Fix up primer3 tests.
tfenne Jan 17, 2025
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3 changes: 2 additions & 1 deletion prymer/__init__.py
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Original file line number Diff line number Diff line change
Expand Up @@ -4,5 +4,6 @@
from prymer.model import Span
from prymer.model import Strand
from prymer.thermo import Thermo
from prymer.variant import VariantLookup

__all__ = ["Strand", "Span", "Oligo", "PrimerPair", "MinOptMax", "Thermo"]
__all__ = ["Strand", "Span", "Oligo", "PrimerPair", "MinOptMax", "Thermo", "VariantLookup"]
14 changes: 0 additions & 14 deletions prymer/api/__init__.py
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Original file line number Diff line number Diff line change
@@ -1,19 +1,5 @@
from prymer.api.picking import build_primer_pairs
from prymer.api.variant_lookup import FileBasedVariantLookup
from prymer.api.variant_lookup import SimpleVariant
from prymer.api.variant_lookup import VariantLookup
from prymer.api.variant_lookup import VariantOverlapDetector
from prymer.api.variant_lookup import VariantType
from prymer.api.variant_lookup import cached
from prymer.api.variant_lookup import disk_based

__all__ = [
"build_primer_pairs",
"VariantType",
"SimpleVariant",
"VariantLookup",
"FileBasedVariantLookup",
"VariantOverlapDetector",
"cached",
"disk_based",
]
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