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Tool shed repository 'package_perl_5_18' tool dependencies - perl error #609
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Hi @gad83 I believe this was recently patched in Galaxy. |
Hello @erasche , thank you for the response. salutations, |
I don't believe it is. @nsoranzo should we backport to 15.10? |
There is a very good argument for reverting the whitespace changes. |
@nsoranzo ok, go for it. I'm of the mind that it's only devs reading this so it should be legible to us, but since this will cause issues for people who aren't up-to-date, let's fix it. |
hello guys, |
I've "git pull" the updates. git pullremote: Counting objects: 230, done. git branch -av
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Sorry, that may not have been clear. You have to update the package in your galaxy instance, |
I'm still seeing installation problems with the latest version of package_perl_5_18 - revision 35f117d7396b. I'm trying to install on Debian 3.2.60-1+deb7u3 x86_64 GNU/Linux and I get this exception:
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Difficult to say what's the problem here ... I don't really see an error that we could go look for :/ |
It might be this weird obsession for PERL to try to write to the $HOME directory. Perhaps |
@mvdbeek I'm still getting the same compile error that I listed above. Here is the relevant portion of the install log. Do you see something that looks like a cause I can correct? The "makefile out of date" issue seems strange... updated lib/Config.pm |
bug over bug ... :/ |
http://www.perlmonks.org/?node_id=992572 gave me the idea for a potential permission problem. |
@gad83 that's a bug that had been fixed in the 16.01 release (plus an additional fix that still needs to be backported from dev). |
Yes, that should be okay. When you update galaxy to 16.01, a repair will remove the outdated dependency from the database. What you can do to make sure that the dependency works is to click on package_perl_5_18, then on perl under the installed tool dependencies. It will show you a path. When you go to that directory, you should find a env.sh file. If you source the file [ |
done and works ! |
Hello,
I'm on galaxy release_15.10
I tried to install the tool shed repository 'package_perl_5_18'.
It comes with two tools dependencies
However, I have a error. Please take a look at the picture.
Thank you!
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