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Hello! This is an automated update of the following tool: tools/minimap2. I created this PR because I think the tool's main dependency is out of date, i.e. there is a newer version available through conda.

I have updated tools/minimap2 from version 2.28 to 2.29.

Project home page: https://github.com/lh3/minimap2/releases

For any comments, queries or criticism about the bot, not related to the tool being updated in this PR, please create an issue here.

If you want to skip this change, close this PR without deleting the branch. It will be reopened if another change is detected.

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@bgruening bgruening requested a review from SaimMomin12 April 21, 2025 18:03
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SaimMomin12 commented Apr 22, 2025

I think we could add splice:sr parameter for short read mapping as per the latest version.

@SaimMomin12 SaimMomin12 self-assigned this Apr 22, 2025
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There are new updates, they have been integrated to the PR, check the file diff.

@gxydevbot gxydevbot changed the title Updating tools/minimap2 from version 2.28 to 2.29 Updating tools/minimap2 from version 2.28 to 2.30 Jun 16, 2025
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There are new updates, they have been integrated to the PR, check the file diff.

@gxydevbot
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There are new updates, they have been integrated to the PR, check the file diff.

@gxydevbot
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There are new updates, they have been integrated to the PR, check the file diff.

@gxydevbot
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There are new updates, they have been integrated to the PR, check the file diff.

@gxydevbot
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There are new updates, they have been integrated to the PR, check the file diff.

@gxydevbot
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There are new updates, they have been integrated to the PR, check the file diff.

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2 participants