Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Obsoleted 10 terms; #28506 #29388

Merged
merged 1 commit into from
Dec 6, 2024
Merged

Obsoleted 10 terms; #28506 #29388

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
91 changes: 50 additions & 41 deletions src/ontology/go-edit.obo
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -132665,21 +132665,23 @@ is_a: GO:0043687 ! post-translational protein modification

[Term]
id: GO:0018411
name: protein glucuronidation
name: obsolete protein glucuronidation
namespace: biological_process
def: "The modification of a protein by amino acid glucuronidation." [GOC:ai]
subset: gocheck_obsoletion_candidate
def: "OBSOLETE. The modification of a protein by amino acid glucuronidation." [GOC:ai]
comment: The reason for obsoletion is that the term represents a molecular function.
synonym: "protein amino acid glucuronidation" EXACT [GOC:bf]
is_a: GO:0036211 ! protein modification process
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI
is_obsolete: true

[Term]
id: GO:0018412
name: protein O-glucuronidation
name: obsolete protein O-glucuronidation
namespace: biological_process
def: "The modification of a protein by glucuronidation on an amino acid oxygen atom." [GOC:mah]
subset: gocheck_obsoletion_candidate
def: "OBSOLETE. The modification of a protein by glucuronidation on an amino acid oxygen atom." [GOC:mah]
comment: The reason for obsoletion is that the term represents a molecular function.
synonym: "protein amino acid O-glucuronidation" EXACT [GOC:bf]
is_a: GO:0018411 ! protein glucuronidation
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI
is_obsolete: true

[Term]
id: GO:0018413
Expand Down Expand Up @@ -223588,28 +223590,34 @@ creation_date: 2012-05-11T10:57:48Z

[Term]
id: GO:0036234
name: deglucuronidation
name: obsolete deglucuronidation
namespace: biological_process
def: "The removal of glucuronic acid from a conjugated substrate." [GOC:BHF, GOC:vk, PMID:22294686, PMID:8560473]
is_a: GO:0019585 ! glucuronate metabolic process
def: "OBSOLETE. The removal of glucuronic acid from a conjugated substrate." [GOC:BHF, GOC:vk, PMID:22294686, PMID:8560473]
comment: The reason for obsoletion is that the term represents a molecular function.
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI
is_obsolete: true
created_by: bf
creation_date: 2012-05-18T04:23:04Z

[Term]
id: GO:0036235
name: acyl deglucuronidation
name: obsolete acyl deglucuronidation
namespace: biological_process
def: "The removal of glucuronic acid from an acyl-glucuronide." [GOC:BHF, GOC:vk, PMID:22294686]
is_a: GO:0036234 ! deglucuronidation
def: "OBSOLETE. The removal of glucuronic acid from an acyl-glucuronide." [GOC:BHF, GOC:vk, PMID:22294686]
comment: The reason for obsoletion is that the term represents a molecular function.
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI
is_obsolete: true
created_by: bf
creation_date: 2012-05-18T04:24:11Z

[Term]
id: GO:0036236
name: acyl glucuronidation
name: obsolete acyl glucuronidation
namespace: biological_process
def: "The modification of an substrate by the conjugation of glucuronic acid to form an acyl-glucuronide (also called an acyl-glucuronoside)." [GOC:BHF, GOC:vk, PMID:12485951, PMID:22294686]
is_a: GO:0052695 ! cellular glucuronidation
def: "OBSOLETE. The modification of an substrate by the conjugation of glucuronic acid to form an acyl-glucuronide (also called an acyl-glucuronoside)." [GOC:BHF, GOC:vk, PMID:12485951, PMID:22294686]
comment: The reason for obsoletion is that the term represents a molecular function.
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI
is_obsolete: true
created_by: bf
creation_date: 2012-05-18T04:26:25Z

Expand Down Expand Up @@ -337911,14 +337919,16 @@ is_a: GO:0004497 ! monooxygenase activity

[Term]
id: GO:0052695
name: cellular glucuronidation
name: obsolete cellular glucuronidation
namespace: biological_process
def: "The modification of an organic chemical by the conjugation of glucuronic acid. The substances resulting from glucuronidation are known as glucuronosides (or glucuronides) and are often much more water-soluble than the non-glucuronic acid-containing precursor." [GOC:BHF]
def: "OBSOLETE. The modification of an organic chemical by the conjugation of glucuronic acid. The substances resulting from glucuronidation are known as glucuronosides (or glucuronides) and are often much more water-soluble than the non-glucuronic acid-containing precursor." [GOC:BHF]
comment: The reason for obsoletion is that the term represents a molecular function.
synonym: "cellular glucuronide biosynthesis" EXACT []
synonym: "cellular glucuronide biosynthetic process" EXACT []
synonym: "cellular glucuronoside biosynthesis" EXACT []
synonym: "cellular glucuronoside biosynthetic process" EXACT []
is_a: GO:0019585 ! glucuronate metabolic process
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI
is_obsolete: true
creation_date: 2011-07-27T05:28:18Z

[Term]
Expand All @@ -337931,18 +337941,18 @@ synonym: "flavonoid glucuronide biosynthetic process" EXACT []
synonym: "flavonoid glucuronoside biosynthesis" EXACT []
synonym: "flavonoid glucuronoside biosynthetic process" EXACT []
is_a: GO:0009812 ! flavonoid metabolic process
is_a: GO:0052695 ! cellular glucuronidation
created_by: ai
creation_date: 2011-07-27T05:37:44Z

[Term]
id: GO:0052697
name: xenobiotic glucuronidation
name: obsolete xenobiotic glucuronidation
namespace: biological_process
def: "The modification of a xenobiotic substance by the conjugation of glucuronic acid. The resultant glucuronosides are often much more water-soluble than the xenobiotic precursor, enabling efficient excretion." [GOC:BHF, PMID:20056724]
def: "OBSOLETE. The modification of a xenobiotic substance by the conjugation of glucuronic acid. The resultant glucuronosides are often much more water-soluble than the xenobiotic precursor, enabling efficient excretion." [GOC:BHF, PMID:20056724]
comment: The reason for obsoletion is that the term represents a molecular function.
synonym: "phase II metabolism" NARROW []
is_a: GO:0006805 ! xenobiotic metabolic process
is_a: GO:0052695 ! cellular glucuronidation
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI
is_obsolete: true
created_by: ai
creation_date: 2011-07-27T05:37:50Z

Expand Down Expand Up @@ -597764,47 +597774,46 @@ creation_date: 2011-08-22T01:07:34Z

[Term]
id: GO:2001029
name: regulation of cellular glucuronidation
name: obsolete regulation of cellular glucuronidation
namespace: biological_process
def: "Any process that modulates the frequency, rate or extent of cellular glucuronidation." [GOC:BHF]
def: "OBSOLETE. Any process that modulates the frequency, rate or extent of cellular glucuronidation." [GOC:BHF]
comment: The reason for obsoletion is that the term represents a molecular function.
synonym: "regulation of cellular glucuronide biosynthesis" EXACT [GOC:obol]
synonym: "regulation of cellular glucuronide biosynthetic process" EXACT [GOC:obol]
synonym: "regulation of cellular glucuronoside biosynthesis" EXACT [GOC:obol]
synonym: "regulation of cellular glucuronoside biosynthetic process" EXACT [GOC:obol]
is_a: GO:0006109 ! regulation of carbohydrate metabolic process
is_a: GO:0010565 ! regulation of ketone metabolic process
intersection_of: GO:0065007 ! biological regulation
intersection_of: regulates GO:0052695 ! cellular glucuronidation
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI
is_obsolete: true
created_by: rl
creation_date: 2011-08-22T01:10:52Z

[Term]
id: GO:2001030
name: negative regulation of cellular glucuronidation
name: obsolete negative regulation of cellular glucuronidation
namespace: biological_process
def: "Any process that stops, prevents or reduces the frequency, rate or extent of cellular glucuronidation." [GOC:BHF]
def: "OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of cellular glucuronidation." [GOC:BHF]
comment: The reason for obsoletion is that the term represents a molecular function.
synonym: "negative regulation of cellular glucuronide biosynthesis" EXACT [GOC:obol]
synonym: "negative regulation of cellular glucuronide biosynthetic process" EXACT [GOC:obol]
synonym: "negative regulation of cellular glucuronoside biosynthesis" EXACT [GOC:obol]
synonym: "negative regulation of cellular glucuronoside biosynthetic process" EXACT [GOC:obol]
is_a: GO:0045912 ! negative regulation of carbohydrate metabolic process
intersection_of: GO:0065007 ! biological regulation
intersection_of: negatively_regulates GO:0052695 ! cellular glucuronidation
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI
is_obsolete: true
created_by: rl
creation_date: 2011-08-22T01:10:56Z

[Term]
id: GO:2001031
name: positive regulation of cellular glucuronidation
name: obsolete positive regulation of cellular glucuronidation
namespace: biological_process
def: "Any process that activates or increases the frequency, rate or extent of cellular glucuronidation." [GOC:BHF]
def: "OBSOLETE. Any process that activates or increases the frequency, rate or extent of cellular glucuronidation." [GOC:BHF]
comment: The reason for obsoletion is that the term represents a molecular function.
synonym: "positive regulation of cellular glucuronide biosynthesis" EXACT [GOC:obol]
synonym: "positive regulation of cellular glucuronide biosynthetic process" EXACT [GOC:obol]
synonym: "positive regulation of cellular glucuronoside biosynthesis" EXACT [GOC:obol]
synonym: "positive regulation of cellular glucuronoside biosynthetic process" EXACT [GOC:obol]
is_a: GO:0045913 ! positive regulation of carbohydrate metabolic process
intersection_of: GO:0065007 ! biological regulation
intersection_of: positively_regulates GO:0052695 ! cellular glucuronidation
property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28506" xsd:anyURI
is_obsolete: true
created_by: rl
creation_date: 2011-08-22T01:10:59Z

Expand Down
Loading