[deep-report] Enable safe-input GitHub query tools for Daily Project Performance Summary

[github-actions]

Description

The Daily Project Performance Summary workflow reports missing safe-input GitHub query tools, preventing it from collecting PR/issue/discussion metrics. Add the required safe-input tools (github-pr-query, github-issue-query, github-discussion-query) to the workflow/tool config so the workflow can execute without missing-tool errors.

Expected Impact

Restores full metrics coverage in the performance summary workflow and eliminates the recurring missing-tool warning.

Suggested Agent

Workflow Health Manager or a config-focused agent

Estimated Effort

Quick (< 1 hour)

Data Source

DeepReport Intelligence Briefing - 2026-01-21 (discussion #10941)

AI generated by DeepReport - Intelligence Gathering Agent

[github-actions]

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