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Bump com.github.samtools:htsjdk from 1.128 to 3.0.1 #227
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Bumps [com.github.samtools:htsjdk](https://github.com/samtools/htsjdk) from 1.128 to 3.0.1. - [Release notes](https://github.com/samtools/htsjdk/releases) - [Commits](samtools/htsjdk@1.128...3.0.1) --- updated-dependencies: - dependency-name: com.github.samtools:htsjdk dependency-type: direct:production ... Signed-off-by: dependabot[bot] <support@github.com>
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Bumps com.github.samtools:htsjdk from 1.128 to 3.0.1.
Release notes
Sourced from com.github.samtools:htsjdk's releases.
... (truncated)
Commits
4a4024aFix temporary directory hijacking or temporary directory information disclosu...9fd0ecfDisable codecov until we can fix the uploader (#1622)347c0acFix EdgeReadIterator (#1616)d15a5baAdded ULTIMA and ELEMENT as valid value for RG-PL according to SAM spec. (#1619)489c419Support CRAM reference regions. (#1605)f461401Silence AsciiLineReader warning when creating a FASTA sequence index (#1559)1449decSupport loading of CSI from URLs/streams. #1507 (#1595)22aec67Fix decoding of CRAM Scores read feature during normalization. (#1592)70e4259Remove unnecessary println in test (#1602)6507249Make the CRAM MD5 failure message more user friendly. (#1607)Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting
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