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Releases: gymreklab/GangSTR

GangSTR v2.5

29 Jan 18:43
@nmmsv nmmsv
v2.5
e368b9f
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GangSTR v2.5 Latest
Latest

Changed build system to CMake. This should help with compatibility across different systems.

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Fixed compile issue in ubuntu 20.04

23 Oct 01:01
@nmmsv nmmsv
v2.4.6
b454927
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Fixed compile issue in ubuntu 20.04 Pre-release
Pre-release

A minor change that fixes the core dump issue in ubuntu 20.04.

Based on:
#92
Fixed in:
#97

Assets 3
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Improved robustness and bug fixes

15 Aug 20:01
@nmmsv nmmsv
v2.4.5
8f1b1a8
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Improved robustness and bug fixes Pre-release
Pre-release 
v2.4.5

Improved robustness and bug fixes
Assets 3
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v2.4.4

24 Apr 22:51
@nmmsv nmmsv
v2.4.4
6550a3b
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v2.4.4 Pre-release
Pre-release

Added support for sex chromosomes.

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GangSTR v2.4.2

23 Apr 01:14
@nmmsv nmmsv
v2.4.2
ae17ab0
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GangSTR v2.4.2 Pre-release
Pre-release

Minor changes:

  • Added ENCLREADS and FLNKREADS to VCF file to summarize the reads in enclosing and flanking classes in a key value format.
Assets 3
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GangSTR v2.4.1

22 Apr 18:23
@nmmsv nmmsv
v2.4.1
2a0e229
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GangSTR v2.4.1 Pre-release
Pre-release

New features:

  • Added threshold for max number of processed reads per region per sample (--max-proc-read).
Assets 3
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GangSTR v2.4

07 Mar 22:48
@gymreklab gymreklab
v2.4
ec72614
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GangSTR v2.4

Added CRAM support

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GangSTR v2.3.1

07 Mar 04:42
@gymreklab gymreklab
v2.3.1
3db25f8
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GangSTR v2.3.1

Minor fixes:

  • Updated command line option defaults
  • Fixed rare issue with reporting length 0 alleles
Assets 3
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GangSTR v2.3

22 Feb 20:50
@gymreklab gymreklab
v2.3
0c87e17
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GangSTR v2.3

Incorporates the following major changes (from v2.2)

  • multi-sample calling
  • Big speedups
  • Improved quality scores for detecting expansions

Plus:

  • Minor changes in default options
Assets 3
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GangSTR v2.1

14 Feb 17:41
@gymreklab gymreklab
v2.1
935939c
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GangSTR v2.1 Pre-release
Pre-release

Many new features including:

  • multi-sample calling
  • Big speedups
  • Improved quality scores for detecting expansions
Assets 3
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