Skip to content

Issues: hartleys/JunctionSeq

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

28 Open 28 Closed
28 Open 28 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Can JunctionSeq be used in long-read RNA-seq ONT data?
#60 opened Jun 5, 2023 by kaanokay
QoRTs/JunctionSeq with Rsubread alignment
#58 opened Mar 16, 2021 by jmbono
2
Normalized gene counts of 0?
#57 opened Mar 7, 2021 by alanbergland
1
Sig gene wtih the P-value as NA
#56 opened Jan 17, 2021 by zhouqz
2
Junctionseq marked as deprecated in bioconductor.
#55 opened Dec 18, 2020 by tbrittoborges
weird dispersion plot
#54 opened Nov 10, 2020 by scseekers
1
writeCompleteResults : Error in data.frame(..., check.names = FALSE)
#53 opened Oct 29, 2020 by YanliangDou
Unable to view splice junction tracks on ucsc browser
#52 opened Aug 6, 2020 by varsha090597
1
Error: all samples have 0 counts for all genes. check the counting script
#51 opened Jul 31, 2020 by HeenaBioinfo
Error in estimateSizeFactorsForMatrix(counts.byGenes)
#50 opened Jul 29, 2020 by HeenaBioinfo
2
estimateEffectSizes: Error in if (any(dispersion < 0)) stop("dispersion values must be non-negative")
#49 opened Jul 21, 2020 by ashish674675
2
independent filtering on the gene counts
#48 opened May 12, 2020 by shivarice
1
error in reading decoder file
#46 opened Apr 8, 2020 by CS791
1
Error in cf[[pvn]] : subscript out of bounds
#44 opened Sep 6, 2019 by nicholas-owen
plot interpretation
#43 opened Apr 20, 2019 by natallah
4
can't install the packages 'backports','nlme'
#42 opened Apr 10, 2019 by HL2007
1
Multiple conditions comparsion
#40 opened Jan 18, 2019 by LOYON2019
1
parallel run (nCores > 1) always fails
#39 opened Dec 13, 2018 by slowsmile
1
How To Calculate PSI with JunctionSeq
#38 opened Dec 6, 2018 by xysj1989
1
Missing genes in allGenes.results.txt
#37 opened Sep 12, 2018 by sagarutturkar
4
DESeq2 version collision
#36 opened Aug 22, 2018 by gfucile
7
Zero counts for whole LY75
#32 opened Mar 15, 2018 by cwtkiwi
2
Dead links on JunctionSeq page
#29 opened Jan 9, 2018 by mebbert
1
Two-pass alignment?
#28 opened Jan 9, 2018 by mebbert
splice junction usage between multiple tissues
#26 opened Oct 23, 2017 by frankbioinfo
3
ProTip! Find all open issues with in progress development work with linked:pr.