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IDIOMS Update & BULKI v0.1 #203

Merged
merged 883 commits into from
Sep 10, 2024
Merged

IDIOMS Update & BULKI v0.1 #203

merged 883 commits into from
Sep 10, 2024
This pull request is big! We’re only showing the most recent 250 commits.

Commits on Oct 14, 2023

  1. Merge branch 'develop' of github.com:zhangwei217245/pdc into feature/… 

    …dart
    @zhangwei217245
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  2. fix cmake mercury_util not found issue

    @zhangwei217245
    zhangwei217245 committed Oct 14, 2023
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  3. update for Julia support

    @zhangwei217245
    zhangwei217245 committed Oct 14, 2023
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  4. fix hdf5.h not found for src/tools

    @zhangwei217245
    zhangwei217245 committed Oct 14, 2023
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  5. update container config

    @zhangwei217245
    zhangwei217245 committed Oct 14, 2023
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  6. update container config

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    zhangwei217245 committed Oct 14, 2023
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  7. update container config

    @zhangwei217245
    zhangwei217245 committed Oct 14, 2023
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  8. update container config

    @zhangwei217245
    zhangwei217245 committed Oct 14, 2023
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  9. update container config

    @zhangwei217245
    zhangwei217245 committed Oct 14, 2023
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  10. update container config

    @zhangwei217245
    zhangwei217245 committed Oct 14, 2023
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  11. update container config

    @zhangwei217245
    zhangwei217245 committed Oct 14, 2023
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  12. update container config

    @zhangwei217245
    zhangwei217245 committed Oct 14, 2023
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  13. update container config

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    zhangwei217245 committed Oct 14, 2023
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Commits on Oct 15, 2023

  1. update container config

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    zhangwei217245 committed Oct 15, 2023
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Commits on Oct 16, 2023

  1. add libhdf5-dev for Github Actions

    @zhangwei217245
    zhangwei217245 committed Oct 16, 2023
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  2. Merge branch 'develop' of github.com:zhangwei217245/pdc into feature/… 

    …dart
    @zhangwei217245
    zhangwei217245 committed Oct 16, 2023
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Commits on Oct 17, 2023

  1. update CMake for HDF5 in tools

    @zhangwei217245
    zhangwei217245 committed Oct 17, 2023
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  2. update logic for finding HDF5

    @zhangwei217245
    zhangwei217245 committed Oct 17, 2023
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  3. update

    @zhangwei217245
    zhangwei217245 committed Oct 17, 2023
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  4. remove use system hdf5

    @zhangwei217245
    zhangwei217245 committed Oct 17, 2023
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  5. delete useless find library

    @zhangwei217245
    zhangwei217245 committed Oct 17, 2023
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  6. update findHDF5

    @zhangwei217245
    zhangwei217245 committed Oct 17, 2023
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  7. update findHDF5

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    zhangwei217245 committed Oct 17, 2023
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Commits on Oct 18, 2023

  1. update

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    zhangwei217245 committed Oct 18, 2023
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  2. update

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    zhangwei217245 committed Oct 18, 2023
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  3. update

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    zhangwei217245 committed Oct 18, 2023
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  4. update

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    zhangwei217245 committed Oct 18, 2023
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  5. Feature/dart (#11) 

    Update to avoid fixing compilation issue on src/tools (due to : HDF5 cannot be found)
    @zhangwei217245
    zhangwei217245 authored Oct 18, 2023
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Commits on Oct 20, 2023

  1. Use cc on Perlmutter (hpc-io#161) 

    Dr. Tang fixed a compilation issue in NERSC CI where HDF5 cannot be detected even if the cray-parallel-hdf5 module is loaded on Perlmultter.
    @houjun
    houjun authored Oct 20, 2023
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  2. Merge branch 'hpc-io:develop' into develop

    @zhangwei217245
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  3. Merge branch 'develop' of github.com:zhangwei217245/pdc into feature/… 

    …dart
    @zhangwei217245
    zhangwei217245 committed Oct 20, 2023
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  4. update with fixes on tools and llsm example

    @zhangwei217245
    zhangwei217245 committed Oct 20, 2023
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  5. add gitignore for llsm

    @zhangwei217245
    zhangwei217245 committed Oct 20, 2023
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  6. update gitignore

    @zhangwei217245
    zhangwei217245 committed Oct 20, 2023
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  7. Feature/dart (#12)

    @zhangwei217245
    zhangwei217245 authored Oct 20, 2023
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  8. fix formatting

    @zhangwei217245
    zhangwei217245 committed Oct 20, 2023
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  9. update clangformat10

    @zhangwei217245
    zhangwei217245 committed Oct 20, 2023
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Commits on Oct 23, 2023

  1. update base dockerfile

    @zhangwei217245
    zhangwei217245 committed Oct 23, 2023
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  2. conflict addressed

    @zhangwei217245
    zhangwei217245 committed Oct 23, 2023
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  3. Add clang-format10 to docker container. Also fixed clang-format. 

    Add clang-format10 to docker container. Also fixed clang-format.
    @zhangwei217245
    zhangwei217245 authored Oct 23, 2023
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  4. Fix pdc ls (hpc-io#154) 

    * pdc import, export, ls compiled successfully

* removed requested files

* formatting issues

* changed install tools

* gets checkpoint files

* grabbing checkpoint files from within sub-directories, minor comments

* Committing clang-format changes

* Committing clang-format changes

* Fix a few issues with pdc_ls

* Committing clang-format changes

---------

Co-authored-by: nickaruwang <nickwan0318@gmail.com>
Co-authored-by: Nick Wang <66816536+nickaruwang@users.noreply.github.com>
Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com>
Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>
    @houjun @nickaruwang
    @github-actions @jeanbez
    5 people authored Oct 23, 2023
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  5. Merge branch 'develop' into develop

    @jeanbez
    jeanbez authored Oct 23, 2023
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  6. update documentation

    @zhangwei217245
    zhangwei217245 committed Oct 23, 2023
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  7. update document 

    update document
    @zhangwei217245
    zhangwei217245 authored Oct 23, 2023
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  8. Merge branch 'develop' of github.com:zhangwei217245/pdc into feature/… 

    …dart
    @zhangwei217245
    zhangwei217245 committed Oct 23, 2023
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  9. sync branch 

    sync branch
    @zhangwei217245
    zhangwei217245 authored Oct 23, 2023
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Commits on Oct 26, 2023

  1. no UUID module is required

    @zhangwei217245
    zhangwei217245 committed Oct 26, 2023
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  2. Merge branch 'feature/dart' of github.com:zhangwei217245/pdc into fea… 

    …ture/dart
    @zhangwei217245
    zhangwei217245 committed Oct 26, 2023
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  3. update document and make UUID an optional package

    @zhangwei217245
    zhangwei217245 committed Oct 26, 2023
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Commits on Oct 31, 2023

  1. Merge branch 'develop' of github.com:zhangwei217245/pdc into feature/… 

    …dart
    @zhangwei217245
    zhangwei217245 committed Oct 31, 2023
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  2. update docker repo name

    @zhangwei217245
    zhangwei217245 committed Oct 31, 2023
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  3. updating docker repo name and make UUID optional

    @zhangwei217245
    zhangwei217245 authored Oct 31, 2023
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  4. Complete support for Docker and Github Codespace (hpc-io#157) 

    Include support for Docker and Github Codespace so we can run our dev environment with the support of Docker.
    @zhangwei217245
    zhangwei217245 authored Oct 31, 2023
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Commits on Nov 26, 2023

  1. Merge branch 'hpc-io:develop' into develop

    @zhangwei217245
    zhangwei217245 authored Nov 26, 2023
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  2. SQLite and RocksDB support for KVtags (hpc-io#165) 

    SQLite and RocksDB support for KVtags
    @houjun
    houjun authored Nov 26, 2023
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  3. Merge branch 'hpc-io:develop' into develop

    @zhangwei217245
    zhangwei217245 authored Nov 26, 2023
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  4. fix round for tag delete

    @zhangwei217245
    zhangwei217245 committed Nov 26, 2023
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  5. Merge branch 'develop' of github.com:zhangwei217245/pdc into feature/… 

    …dart
    @zhangwei217245
    zhangwei217245 committed Nov 26, 2023
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  6. update test

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    zhangwei217245 committed Nov 26, 2023
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Commits on Nov 28, 2023

  1. update

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  2. Merge branch 'feature/dart' of github.com:zhangwei217245/pdc into fea… 

    …ture/dart
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Commits on Nov 29, 2023

  1. bulki update

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Commits on Nov 30, 2023

  1. update

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  2. update

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Commits on Dec 1, 2023

  1. update

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  2. BULKI base type worked

    @zhangwei217245
    zhangwei217245 committed Dec 1, 2023
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  3. BULKI all tests done

    @zhangwei217245
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  4. update

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Commits on Dec 4, 2023

  1. update

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Commits on Dec 7, 2023

  1. new index code

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    zhangwei217245 committed Dec 7, 2023
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  2. update

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    zhangwei217245 committed Dec 7, 2023
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  3. update

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    zhangwei217245 committed Dec 7, 2023
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  4. update

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    zhangwei217245 committed Dec 7, 2023
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  5. update

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    zhangwei217245 committed Dec 7, 2023
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  6. update

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  7. update

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  8. update

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    zhangwei217245 committed Dec 7, 2023
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  9. update

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Commits on Dec 9, 2023

  1. update new test

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    zhangwei217245 committed Dec 9, 2023
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  2. update csv bench

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    zhangwei217245 committed Dec 9, 2023
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Commits on Dec 11, 2023

  1. update

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    zhangwei217245 committed Dec 11, 2023
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  2. update script

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    zhangwei217245 committed Dec 11, 2023
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  3. update script

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  4. update

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Commits on Jan 23, 2024

  1. adding python scripts for generating large metadata set for LLSM appl… 

    …ication
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Commits on Jan 25, 2024

  1. update json schema

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Commits on Jan 30, 2024

  1. better json validator

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Commits on Feb 2, 2024

  1. update importer

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Commits on Feb 5, 2024

  1. update code for non-MPI compatibility

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  2. update llsm converter

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Commits on Feb 6, 2024

  1. update LLSM data converter

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Commits on Feb 14, 2024

  1. split files

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  2. update .gitignore

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    zhangwei217245 committed Feb 14, 2024
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  3. update

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  4. update

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    zhangwei217245 committed Feb 14, 2024
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  5. update

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    zhangwei217245 committed Feb 14, 2024
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  6. add timing info

    @zhangwei217245
    zhangwei217245 committed Feb 14, 2024
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  7. add timing info

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    zhangwei217245 committed Feb 14, 2024
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  8. update

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    zhangwei217245 committed Feb 14, 2024
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  9. update tag size

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    zhangwei217245 committed Feb 14, 2024
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  10. detect object creation failure

    @zhangwei217245
    zhangwei217245 committed Feb 14, 2024
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  11. update

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  12. update

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  13. update

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    zhangwei217245 committed Feb 14, 2024
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  14. update object name with date

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    zhangwei217245 committed Feb 14, 2024
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  15. update object name with date

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  16. update object name with date

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  17. update object name with date

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  18. update object name with date

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  19. update object name with date

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  20. update object name with date

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  1. update for robustness

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  2. update

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  3. update

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  1. update JMD_DEBUG option

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  1. update output for overall output

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  2. update inttypes.h

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  3. update inttypes.h

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  1. udpate

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  2. update

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  3. update

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  4. update

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  5. update extractor

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  1. update inttypes.h

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  2. update converter

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  3. update converter

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  4. update converter

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  5. update converter

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  6. update importer information

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  7. Update getting_started.rst (hpc-io#184)

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  8. Removing gres option for ctest (hpc-io#182) 

    * Removing gres option for ctest
* Removing gres option from scripts
* Update check for core

---------

Co-authored-by: Hyunju Oh <hjoh16@login15.chn.perlmutter.nersc.gov>
Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>
    @hyunjuooh @jeanbez
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  1. fix issue

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  1. fixed search issues

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  2. fixed search issues

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  1. update

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  2. update

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  1. update

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  1. update

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  1. update

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  3. update

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  1. update for infix

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  1. update

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  2. update

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  3. index persistence still needs improvement

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  1. update

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  1. update

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  1. update

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  2. Merge branch 'feature/dart' of github.com:zhangwei217245/pdc into fea… 

    …ture/dart
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  1. enable cache by default (hpc-io#187)

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  1. Removing PDC macro (hpc-io#189) 

    * Removing gres option for ctest
* Removing gres option from scripts
* Update check for core
* Remove PDC macro
* Committing clang-format changes

---------

Co-authored-by: Hyunju Oh <hjoh16@login15.chn.perlmutter.nersc.gov>
Co-authored-by: Jean Luca Bez <jlbez@lbl.gov>
Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com>
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  1. update

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  1. range query done'

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  2. range query local test passed

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  3. multi-condition in progress

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  4. Merge branch 'feature/dart' of github.com:zhangwei217245/pdc into fea… 

    …ture/dart
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  5. clean up code

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  6. add comments

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  1. new benchmark

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  2. update

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  3. update range query test

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  4. update cmake:

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  5. update

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  6. update

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  1. update

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  2. update

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  1. someta range query

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  2. someta range query

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  3. someta range query

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  1. fix value serialization

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  2. update

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  3. update double free

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  1. update

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  2. update

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  3. update

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  1. fixed pointer issue

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  2. rb_tree delete fixed, now need to check index persistence

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  1. update

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  2. update

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  3. update

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  4. update

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  5. update

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  6. update

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  7. update

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  8. update

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  9. update

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  10. update

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  11. update

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  12. update

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  13. update

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  14. BDCATS fix (hpc-io#193) 

    * Fix issues with bdcats_batch

* Committing clang-format changes

---------

Co-authored-by: github-actions <github-actions[bot]@users.noreply.github.com>
    @houjun @github-actions
    houjun and github-actions[bot] authored Apr 11, 2024
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  1. update

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  2. update

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  3. update

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  4. update

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  5. update

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  6. update

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  7. update

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  8. update

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  9. update

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  10. update

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  11. update

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  12. update

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  13. clean up code

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  1. update

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  1. update

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  2. update

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  1. resolve conflict

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  2. resolve conflict with develop

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  3. update test sh

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  4. update

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  5. update

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  6. Merge branch 'feature/dart' of github.com:zhangwei217245/pdc into fea… 

    …ture/dart
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  7. update

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  8. update

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  9. update

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  10. update

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    zhangwei217245 committed Apr 19, 2024
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  11. update

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    zhangwei217245 committed Apr 19, 2024
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  12. update

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    zhangwei217245 committed Apr 19, 2024
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Commits on Apr 23, 2024

  1. update

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    zhangwei217245 committed Apr 23, 2024
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  2. update

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    zhangwei217245 committed Apr 23, 2024
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  3. IDIOMS persistence DONE

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    zhangwei217245 committed Apr 23, 2024
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  4. update

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    zhangwei217245 committed Apr 23, 2024
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Commits on May 28, 2024

  1. remove old kvtag benchmarks

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    zhangwei217245 committed May 28, 2024
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Commits on Jun 11, 2024

  1. update

    @zhangwei217245
    zhangwei217245 committed Jun 11, 2024
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  2. update

    @zhangwei217245
    zhangwei217245 committed Jun 11, 2024
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Commits on Jun 12, 2024

  1. update changes

    @zhangwei217245
    zhangwei217245 committed Jun 12, 2024
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  2. resolve conflict

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    zhangwei217245 committed Jun 12, 2024
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  3. Merge branch 'hpc-io:develop' into develop

    @zhangwei217245
    zhangwei217245 authored Jun 12, 2024
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Commits on Jun 18, 2024

  1. dart info

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    zhangwei217245 committed Jun 18, 2024
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Commits on Jun 22, 2024

  1. update

    @zhangwei217245
    zhangwei217245 committed Jun 22, 2024
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Commits on Jun 24, 2024

  1. multi data type for the same key, supported now

    @zhangwei217245
    zhangwei217245 committed Jun 24, 2024
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  2. Monitoring changes from feature/dart to develop (#18) 

    Major changes: 
* IDIOMS -> affix-based query benchmark
* IDIOMS -> Simulation Test
* IDIOMS -> Multi data type supported for the same key
* IDIOMS -> Range Query and Exact Query for Numeric Values
* IDIOMS -> benchmark for numeric values (exact search and range query)
* IDIOMS -> Index Persistence
* BULKI -> A data serialization and deserialization mechanism.
    @zhangwei217245
    zhangwei217245 authored Jun 24, 2024
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  3. fix CMakeLists.txt

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    zhangwei217245 committed Jun 24, 2024
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  4. update

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    zhangwei217245 committed Jun 24, 2024
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  5. update

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    zhangwei217245 committed Jun 24, 2024
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  6. update format

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    zhangwei217245 committed Jun 24, 2024
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  7. update BULKI interface order

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    zhangwei217245 committed Jun 24, 2024
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  8. BULKI API sorted

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    zhangwei217245 committed Jun 24, 2024
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Commits on Jul 8, 2024

  1. add idioms ci test

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    zhangwei217245 committed Jul 8, 2024
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Commits on Sep 5, 2024

  1. Feature/dart (#20) 

    1. add documentation about BULKI and IDIOMS query conditions
2. add ci test for IDIOMS
3. optimized BULKI to save space on its metadata fields.
    @zhangwei217245
    zhangwei217245 authored Sep 5, 2024
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  2. Feature/dart (#22) 

    update version
    @zhangwei217245
    zhangwei217245 authored Sep 5, 2024
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  3. resolve conflict

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    zhangwei217245 committed Sep 5, 2024
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  4. update

    @zhangwei217245
    zhangwei217245 committed Sep 5, 2024
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  5. update

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    zhangwei217245 committed Sep 5, 2024
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  6. update

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    zhangwei217245 committed Sep 5, 2024
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  7. Merge branch 'develop' into develop

    @zhangwei217245
    zhangwei217245 authored Sep 5, 2024
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  8. remove unnecessary .bin file

    @zhangwei217245
    zhangwei217245 committed Sep 5, 2024
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  9. update

    @zhangwei217245
    zhangwei217245 committed Sep 5, 2024
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  10. update

    @zhangwei217245
    zhangwei217245 committed Sep 5, 2024
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