Update file.py #66
Merged
Update file.py #66
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
- Fixed comment on Visium no probes - Added 10X Multiome OBI term mapping - Added placeholder mapping for assays without published data: DBiT, Hi-Fi Slide, Molecular Cartography, nanoSPLITS, Second Harmonic Generation, Secondary Ion Mass Spectrometry, Thick section Multiphoton MxIF, Xenium
Added AFM dataset_type for datasets without data_type field
Add dataset_type value for Bulk RNAseq
Remove Bulk RNAseq dataset_type mapping; value is not unique
Added snRNAseq (10x Genomics v3) mapping for SenNet data_type and moved all OBI:003109 maps together
Add HuBMAP data_type value for DARTfish
Added OBI mapping for snATACseq (null, ATACseq) and snRNAseq (10x Genomics v3) (null, RNAseq); updated mapping for snATACseq (SNAREseq2) (SNARE-ATACseq2, ATACseq)
Removed RNAseq and ATACseq due to potential duplicate values with different OBI terms
Add Stained Slides (SenNet data_type value for H&E Stained Microscopy) OBI mapping
Update file.py
Updated snare-rnaseq2 mapping to OBI:0003377
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Updated snare-rnaseq2 mapping to OBI:0003377