Merge pull request #35 from peterjc/strand_fix

Strand fix to work with Biopython 1.82
ialbert · Jan 5, 2024 · 438ec66 · 438ec66
2 parents 676bcec + 5e59d06
commit 438ec66
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diff --git a/biorun/parser.py b/biorun/parser.py
@@ -393,7 +393,7 @@ def record_generator(rec):
                 brec = BioRec(id=uid, ann=ann, parent=parent, seq=seq, type=ftype, desc=desc, source=rec.id)
 
                 # Correct the feature coordinates.
-                brec.strand = feat.strand
+                brec.strand = feat.location.strand
 
                 brec.start, brec.end = int(feat.location.start) + 1, int(feat.location.end)
                 brec.locs = [(loc.start + 1, loc.end, loc.strand) for loc in

diff --git a/requirements.txt b/requirements.txt
@@ -1,4 +1,4 @@
-biopython == 1.81
+biopython >= 1.80
 requests
 tqdm
 pytest