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GA features update - Having multi-objective optimization (NSGA-II ) #2326
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061058e
NSGA-II implementation with properly printing optimal solutions at th…
JunyungKim ab4315c
Unnecessary changes in DataSet.py have been removed.
JunyungKim 8b7f5d3
Unnecessary changes in DataSet.py have been removed.
JunyungKim 3fcde82
ZDT test is added.
JunyungKim 15debe4
Optimizer.py and RavenSampled.py are updated after having regression …
JunyungKim 64510df
minor update on Optimizer.py
JunyungKim b1f0c3f
temporary fix, not the way I want
Jimmy-INL 52389c3
NSGA-II testing fiels (multiSum wConstratint and ZDT1) are added.
JunyungKim 391b9c3
moving models, xmls, and trying to resolve GD after converting object…
Jimmy-INL da9e0dd
fixing simulated annealing to accept a list of objectives
Jimmy-INL 1fd2175
fixing rook to compare infs
Jimmy-INL 7cedf83
Merge branch 'junyung-Mohammad-NSGAII' into JunyungKim-junyung-Mohamm…
Jimmy-INL 305c2ac
making one mod in RAVENSAmpled
Jimmy-INL c820eea
making self._minMax a list
Jimmy-INL 21bf42d
erroring out if type is not in ['min', 'max']
Jimmy-INL e639803
updating HERON to b316024
Jimmy-INL 12e11f0
Merge branch 'devel' into enablingMinMaxList
Jimmy-INL be64a4d
updating dependencies
Jimmy-INL ccde4d9
Merge branch 'enablingMinMaxList' of github.com:Jimmy-INL/raven into …
Jimmy-INL 95682a1
removing a trailing space
Jimmy-INL c3688e2
removing windows line endings
Jimmy-INL e25cc37
change to unix ending
Jimmy-INL f0d1412
adding the zdt_model.py
Jimmy-INL c2ca46e
converting zdt to unix line endings
Jimmy-INL 1f1b969
Juan's change to simulateData for the interface
Jimmy-INL c7aebf3
resolving diff based on different batch Size, thanks @wangcj05
Jimmy-INL 64e97a9
converting SimukateData.py to unix line endings
Jimmy-INL b29661b
regolding to print all batches in MOO
Jimmy-INL 9626956
slight mods
Jimmy-INL 34d5cb2
regolding and reverting inf in fitness
Jimmy-INL e0df314
trying to add all outputs to the rlz
Jimmy-INL c0476f7
adding everything to bestPoint
Jimmy-INL 81dc580
chenging type==str to len(self._objectVar) == 1
Jimmy-INL 3f27965
removing unnecessary if statement, this needs revisiting
Jimmy-INL facf74e
modifying reverting cycle length to its value not the inverse
Jimmy-INL a92049c
simulateData updating cost model.
0faeb9c
minor change is made in ZDT1 test.
JunyungKim e9ea9a2
Merge branch 'enablingMinMaxList' of https://github.com/Jimmy-INL/rav…
JunyungKim dbad22c
myConstraints for MultiSum is updated.
JunyungKim 699b3de
Two issues are resolved: population and objective value mismatch, min…
JunyungKim 8cffedb
minor things are corrected. Nothing important.
JunyungKim 9f4eecd
Additional minor changes are made. Nothing important.
JunyungKim 2487621
Additional minor change is made. Nothing important.
JunyungKim 3657634
fitness data structure is changed from data xarray to dataSet. It wor…
285575f
single objective optimization works well with three different types o…
7707f67
NSGA-II improvement is in progress.
a32a45c
fitness-based NSGA-II is in progress. min-min is working well with to…
a9577f4
NSGA-II fitness-based rank and CD calcuration is completed. Temporary…
9b42d7d
minor bugs are fixed.
f6ecb5f
Every type of fitness is now working with newly updated GA interface …
8a26285
multi-objective optimization using invLinear and logistics now works.
51eb867
constraint handling for single and multi objective optimization in _u…
061c3bc
1. If-else statement for survivorSelection in _useRealization is remo…
59d43e1
1. Mohammad's comments are reflected; 2. Unneccesary if-else statemen…
8fb32c3
1. missing descriptions of self are added.
4dc0e57
tournamentSelection method in parentSelectors.py is enhanced followin…
JunyungKim 4f457fe
tournamemntSelection for multi-objective is completed. RouletteWheel …
JunyungKim 9d27568
simpleKnapsackTournament optOut file is regoldened. Final solution is…
JunyungKim 255b58f
Comments from Mohammad are reflected.
JunyungKim f1ad2b3
Minor fixes to the fitness though a list of objective and penalty wei…
Jimmy-INL fae31be
Merge branch 'Junyung-Jimmy-enablingMinMaxList' into JunyungLatest-en…
JunyungKim ea59893
Merge pull request #3 from Jimmy-INL/JunyungLatest-enablingMinMaxList
JunyungKim d23ef44
test file for multi-objective optimization changed: the number of ite…
JunyungKim df6b98d
Junyung-Jimmy-enablingMinMaxList_vf_desk is merged to most-updated de…
f564f29
devel is merged with enabling MinMaxList_vf_desk.
02a961e
Modifications are done: All unit tests and GeneticAlgorithms-related …
JunyungKim ed460f9
SimulateData.py is now identical with the one from devel branch.
JunyungKim f339bf3
GeneticAlgorithm.py is updated. new file beale_flipped2.py is added. …
JunyungKim 261799a
Issues that RAVEN could not catch error when non-rankNCrowdingBased s…
JunyungKim 677b474
RAVEN Manual related changes only are made.
JunyungKim cf67660
Minor changes are made. Functionally identical, just for readibility …
JunyungKim 916eda0
two methods related to survivorSelectors are moved to survivorSelecto…
JunyungKim 366974e
Some comments are left in fitness.py for future reference. invLinear …
JunyungKim ceb701d
Some comments are left in fitness.py for future reference. invLinear …
JunyungKim 35e65e7
Some comments are added/deleted.
JunyungKim c8ac5c9
some files in NSGAII folder which are already relocated to other fold…
JunyungKim ce0aaad
commentations and code cleaning is dnoe in GeneticAlgorithm.py. Funct…
JunyungKim cfd5b31
rlzDict in def _resolveNewGenerationMulti is updated to avoid SIMULAT…
JunyungKim 9d8941c
user manual related update - Equation correction
JunyungKim a055d68
Merge branch 'devel' into Junyung-Jimmy-NSGAII-ManualUpdate-DefectsFix
JunyungKim 580cad8
user manual related update - Equation correction
JunyungKim 06f4a46
very minor change made for user manuel.
JunyungKim a903939
survivorSelection.py is created.
JunyungKim 8482a39
contaminated HERON and TEAL is now back to RAVEN.
97a20bc
the branch, Junyung-Jimmy-NSGAII-ManualUpdate-DefectsFix, is now merg…
372f384
trailing whitespaces are removed.
289094e
Issues created due to having objective variable type be List are part…
7b66055
MultiObjective_Beale-Bealeflipped is added.
a255665
adding gold files and initial fix in RavenSampled.py
Jimmy-INL 52717ae
relaxing image rel error for one test and changing setuptools in the …
Jimmy-INL 0abf956
readding TEAL to .gitmodules
Jimmy-INL 5e3d977
resolving dependencies conflict
Jimmy-INL 460b79b
adding missing dockstrings
Jimmy-INL 7916f3a
removing adaptive mutation and crossover
Jimmy-INL b5c7e02
adding __init__.py for the pip install
Jimmy-INL bc9ab9f
updating xarray version to 2024
Jimmy-INL f9272a4
updating xarray version to 2023.12
Jimmy-INL beaba5a
updating xarray version to 2023.12
Jimmy-INL 163eb87
updating xarray version to 2023.12
Jimmy-INL eadd2d4
relaxing images rel error
Jimmy-INL bfc0157
trying to make it print first iteration after moving function in surv…
Jimmy-INL ca2bd63
pushing the gold files for a new test
Jimmy-INL e52c609
removing commented lines and relaxing image tolerance
Jimmy-INL 66822ee
removing a white space
Jimmy-INL 729187c
relaxing image diff
Jimmy-INL ba8fc08
writing only final result for beale
Jimmy-INL 9f77186
writing only final result for beale
Jimmy-INL bce105e
Merge branch 'idaholab:devel' into Junyung-Jimmy-NSGAII-ManualUpdate-…
JunyungKim 3706ddd
Comments from Diego and Conjian are addressed.
JunyungKim d20eee8
dependencies.xml is updated.
JunyungKim b2cd4b7
additional Congjian's comment is addressed.
JunyungKim 014dae4
dependencies.xml is updated - it is identical with Devel.
JunyungKim d6c84de
NSGA-II branch is merged to up-to-date devel branch.
JunyungKim 730d7a4
white spacing in those two files are removed.
JunyungKim 2598e56
adding a multiobjective optimation example to the manual
Jimmy-INL 6f0cc9e
Merge branch 'devel' into Junyung-Jimmy-NSGAII-ManualUpdate-DefectsFi…
alfoa e7ec6b9
addressing comments related to fitness.py
Jimmy-INL 2f5b3e6
combining constraint Handling and regolding some tests
Jimmy-INL 789baea
removing commented lines
Jimmy-INL ae71e15
Adding xml files for logistic to reflect scale and shift parameters
Jimmy-INL 945505c
regolding
Jimmy-INL 8307dd1
regolding
Jimmy-INL 4089ffd
modifying unit test
Jimmy-INL e49f166
shortening a test so as not to timeout
Jimmy-INL 9154004
regolding PARCS
Jimmy-INL 6f3e814
modifying and adding dockstrings to constraintHandleing.py
Jimmy-INL 89ce09e
adding scale and shift to fitness schema in genetic algorithms
Jimmy-INL 42fa539
asking multiobjective to print only final. Currently it prints it sev…
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Any reason to change to this specific version?
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Yes, @joshua-cogliati-inl suggested this as it was causing diffs in the tests
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FYI, you may check PR #2365 (review) for library changes and try to avoid conflicts.