Reverse-deps-check #1
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| on: workflow_dispatch | |
| name: Reverse-deps-check | |
| jobs: | |
| Reverse-deps-check: | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'release'} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GH_TOKEN }} | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| CDM5_ORACLE_CDM_SCHEMA: ${{ secrets.CDM5_ORACLE_CDM_SCHEMA }} | |
| CDM5_ORACLE_OHDSI_SCHEMA: ${{ secrets.CDM5_ORACLE_OHDSI_SCHEMA }} | |
| CDM5_ORACLE_PASSWORD: ${{ secrets.CDM5_ORACLE_PASSWORD }} | |
| CDM5_ORACLE_SERVER: ${{ secrets.CDM5_ORACLE_SERVER }} | |
| CDM5_ORACLE_USER: ${{ secrets.CDM5_ORACLE_USER }} | |
| CDM5_POSTGRESQL_CDM_SCHEMA: ${{ secrets.CDM5_POSTGRESQL_CDM_SCHEMA }} | |
| CDM5_POSTGRESQL_OHDSI_SCHEMA: ${{ secrets.CDM5_POSTGRESQL_OHDSI_SCHEMA }} | |
| CDM5_POSTGRESQL_PASSWORD: ${{ secrets.CDM5_POSTGRESQL_PASSWORD }} | |
| CDM5_POSTGRESQL_SERVER: ${{ secrets.CDM5_POSTGRESQL_SERVER }} | |
| CDM5_POSTGRESQL_USER: ${{ secrets.CDM5_POSTGRESQL_USER }} | |
| CDM5_SQL_SERVER_CDM_SCHEMA: ${{ secrets.CDM5_SQL_SERVER_CDM_SCHEMA }} | |
| CDM5_SQL_SERVER_OHDSI_SCHEMA: ${{ secrets.CDM5_SQL_SERVER_OHDSI_SCHEMA }} | |
| CDM5_SQL_SERVER_PASSWORD: ${{ secrets.CDM5_SQL_SERVER_PASSWORD }} | |
| CDM5_SQL_SERVER_SERVER: ${{ secrets.CDM5_SQL_SERVER_SERVER }} | |
| CDM5_SQL_SERVER_USER: ${{ secrets.CDM5_SQL_SERVER_USER }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - uses: r-lib/actions/setup-tinytex@v2 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Install system requirements | |
| if: runner.os == 'Linux' | |
| run: | | |
| sudo apt-get install -y make | |
| sudo apt-get install -y default-jdk | |
| sudo apt-get install -y libcurl4-openssl-dev | |
| sudo apt-get install -y libssl-dev | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: | | |
| any::rcmdcheck | |
| any::remotes | |
| needs: check | |
| - name: Install main package develop version | |
| run: | | |
| remotes::install_local(build_opts = c("--no-resave-data", "--no-manual", "--no-build-vignettes", "--no-multiarch")) | |
| shell: Rscript {0} | |
| - name: Get reverse dependencies script | |
| run: | | |
| utils::download.file("https://raw.githubusercontent.com/OHDSI/.github/main/ReverseDependencyCheckFunctions.R", "ReverseDependencyCheckFunctions.R", method = "curl") | |
| shell: Rscript {0} | |
| - name: Install reverse dependencies | |
| run: | | |
| source("ReverseDependencyCheckFunctions.R") | |
| saveRDS(prepareForReverseDependencyCheck(), ".github/reverseDependencies.rds") | |
| shell: Rscript {0} | |
| - name: Check reverse dependencies | |
| run: | | |
| source("ReverseDependencyCheckFunctions.R") | |
| reverseDependencies <- readRDS(".github/reverseDependencies.rds") | |
| if (nrow(reverseDependencies) > 0) | |
| for (i in 1:nrow(reverseDependencies)) | |
| checkPackage(package = reverseDependencies$name[i], inCran = reverseDependencies$inCran[i]) | |
| shell: Rscript {0} |