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s1_orbit: return S1A/S1B when parsing filename #104

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Apr 3, 2023
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90 changes: 40 additions & 50 deletions src/s1reader/s1_orbit.py
Original file line number Diff line number Diff line change
Expand Up @@ -37,17 +37,17 @@ def download_orbit(safe_file: str, orbit_dir: str):
check_internet_connection()

# Parse info from SAFE file name
sensor_id, _, start_time, end_time, _ = parse_safe_filename(safe_file)
mission_id, _, start_time, end_time, _ = parse_safe_filename(safe_file)
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# Find precise orbit first
orbit_dict = get_orbit_dict(sensor_id, start_time,
orbit_dict = get_orbit_dict(mission_id, start_time,
end_time, 'AUX_POEORB')
# If orbit dict is empty, find restituted orbits
if orbit_dict is None:
orbit_dict = get_orbit_dict(sensor_id, start_time,
orbit_dict = get_orbit_dict(mission_id, start_time,
end_time, 'AUX_RESORB')
# Download orbit file
orbit_file = os.path.join(orbit_dir, orbit_dict["orbit_name"] + '.EOF')
orbit_file = os.path.join(orbit_dir, f"{orbit_dict['orbit_name']}.EOF")
if not os.path.exists(orbit_file):
download_orbit_file(orbit_dir, orbit_dict['orbit_url'])

Expand Down Expand Up @@ -76,9 +76,9 @@ def parse_safe_filename(safe_filename):

Returns
-------
List of [sensor_id, mode_id, start_datetime,
List of [mission_id, mode_id, start_datetime,
end_datetime, abs_orbit_num]
sensor_id: sensor identifier (S1A or S1B)
mission_id: sensor identifier (S1A or S1B)
mode_id: mode/beam (e.g. IW)
start_datetime: acquisition start datetime
stop_datetime: acquisition stop datetime
Expand All @@ -88,29 +88,51 @@ def parse_safe_filename(safe_filename):
---------
parse_safe_filename('S1A_IW_SLC__1SDV_20150224T114043_20150224T114111_004764_005E86_AD02.SAFE')
returns
['A', 'IW', datetime.datetime(2015, 2, 24, 11, 40, 43),\
['S1A', 'IW', datetime.datetime(2015, 2, 24, 11, 40, 43),\
datetime.datetime(2015, 2, 24, 11, 41, 11), 4764]
'''

safe_name = os.path.basename(safe_filename)
sensor_id = safe_name[2]
mission_id = safe_name[:3]
sensor_mode = safe_name[4:6]
start_datetime = datetime.datetime.strptime(safe_name[17:32],
FMT)
end_datetime = datetime.datetime.strptime(safe_name[33:48],
FMT)
abs_orb_num = int(safe_name[49:55])

return [sensor_id, sensor_mode, start_datetime, end_datetime, abs_orb_num]
return [mission_id, sensor_mode, start_datetime, end_datetime, abs_orb_num]


def get_orbit_dict(sensor_id, start_time, end_time, orbit_type):
def get_file_name_tokens(zip_path: str) -> [str, list[datetime.datetime]]:
'''Extract swath platform ID and start/stop times from SAFE zip file path.

Parameters
----------
zip_path: list[str]
List containing orbit path strings.
Orbit files required to adhere to naming convention found here:
https://sentinels.copernicus.eu/documents/247904/351187/Copernicus_Sentinels_POD_Service_File_Format_Specification

Returns
-------
mission_id: ('S1A', 'S1B')
orbit_path : str
Path the orbit file.
t_swath_start_stop: list[datetime.datetime]
Swath start/stop times
'''
mission_id, _, start_time, end_time, _ = parse_safe_filename(zip_path)
return mission_id, [start_time, end_time]


def get_orbit_dict(mission_id, start_time, end_time, orbit_type):
'''
Query Copernicus GNSS API to find latest orbit file
Parameters
----------
sensor_id: str
Sentinel satellite identifier ('A' or 'B')
mission_id: str
Sentinel satellite identifier ('S1A' or 'S1B')
start_time: datetime object
Sentinel start acquisition time
end_time: datetime object
Expand Down Expand Up @@ -140,7 +162,7 @@ def get_orbit_dict(sensor_id, start_time, end_time, orbit_type):
pad_end_time = end_time + pad_30_min
new_start_time = pad_start_time.strftime('%Y-%m-%dT%H:%M:%S')
new_end_time = pad_end_time.strftime('%Y-%m-%dT%H:%M:%S')
query_string = f"startswith(Name,'S1{sensor_id}') and substringof('{orbit_type}',Name) " \
query_string = f"startswith(Name,'{mission_id}') and substringof('{orbit_type}',Name) " \
f"and ContentDate/Start lt datetime'{new_start_time}' and ContentDate/End gt datetime'{new_end_time}'"
query_params = {'$top': 1, '$orderby': 'ContentDate/Start asc',
'$filter': query_string}
Expand Down Expand Up @@ -193,32 +215,6 @@ def download_orbit_file(output_folder, orbit_url):
return orbit_file


def get_file_name_tokens(zip_path: str) -> [str, list[datetime.datetime]]:
'''Extract swath platform ID and start/stop times from SAFE zip file path.

Parameters
----------
zip_path: list[str]
List containing orbit path strings. Orbit files required to adhere to
naming convention found here:
https://s1qc.asf.alaska.edu/aux_poeorb/

Returns
-------
platform_id: ('S1A', 'S1B')
orbit_path : str
Path the orbit file.
t_swath_start_stop: list[datetime.datetime]
Swath start/stop times
'''
platform_id, _, start_time, end_time, _ = parse_safe_filename(zip_path)
return platform_id,[start_time, end_time]


# lambda to check if file exists if desired sat_id in basename
item_valid = lambda item, sat_id: os.path.isfile(item) and sat_id in os.path.basename(item)


def get_orbit_file_from_dir(zip_path: str, orbit_dir: str, auto_download: bool = False) -> str:
'''Get orbit state vector list for a given swath.

Expand Down Expand Up @@ -252,12 +248,6 @@ def get_orbit_file_from_dir(zip_path: str, orbit_dir: str, auto_download: bool =
print(f"{orbit_dir} not found, creating directory.")
os.makedirs(orbit_dir, exist_ok=True)

# extract platform id, start and end times from swath file name
platform_id, t_swath_start_stop = get_file_name_tokens(zip_path)

# initiate output
orbit_file = ''

# search for orbit file
orbit_file_list = glob.glob(os.path.join(orbit_dir, 'S1*.EOF'))

Expand Down Expand Up @@ -292,23 +282,24 @@ def get_orbit_file_from_list(zip_path: str, orbit_file_list: list) -> str:
Returns:
--------
orbit_file : str
Path to the orbit file.
Path to the orbit file, or an empty string if no orbit file was found.
'''

# check the existence of input file path and directory
if not os.path.exists(zip_path):
raise FileNotFoundError(f"{zip_path} does not exist")

# extract platform id, start and end times from swath file name
platform_id, t_swath_start_stop = get_file_name_tokens(zip_path)
mission_id, t_swath_start_stop = get_file_name_tokens(zip_path)

# initiate output
orbit_file_final = ''

# search for orbit file
for orbit_file in orbit_file_list:
# check if file validity
if not item_valid(orbit_file, platform_id):
if not os.path.isfile(orbit_file):
continue
if mission_id not in os.path.basename(orbit_file):
continue

# get file name and extract state vector start/end time strings
Expand All @@ -332,4 +323,3 @@ def get_orbit_file_from_list(zip_path: str, orbit_file_list: list) -> str:
warnings.warn(msg)

return orbit_file_final

20 changes: 20 additions & 0 deletions tests/test_orbit.py
Original file line number Diff line number Diff line change
Expand Up @@ -6,12 +6,32 @@

from s1reader.s1_orbit import get_orbit_file_from_dir


def test_get_orbit_file(test_paths):
orbit_file = get_orbit_file_from_dir(test_paths.safe, test_paths.orbit_dir)

expected_orbit_path = f'{test_paths.orbit_dir}/{test_paths.orbit_file}'
assert orbit_file == expected_orbit_path


def test_get_orbit_file_multi_mission(tmp_path):
orbit_a = tmp_path / "S1A_OPER_AUX_POEORB_OPOD_20210314T131617_V20191007T225942_20191009T005942.EOF"
orbit_a.write_text("")
orbit_b = tmp_path / "S1B_OPER_AUX_POEORB_OPOD_20210304T232500_V20191007T225942_20191009T005942.EOF"
orbit_b.write_text("")

zip_path = tmp_path / "zips"
zip_path.mkdir()
zip_a = zip_path / "S1A_IW_SLC__1SDV_20191008T005936_20191008T010003_018377_0229E5_909C.zip"
zip_a.write_text("")
zip_b = zip_path / "S1B_IW_SLC__1SDV_20191008T005936_20191008T010003_018377_0229E5_909C.zip"
zip_b.write_text("")

# Test S1A zip file
assert get_orbit_file_from_dir(zip_a, orbit_dir=tmp_path) == str(orbit_a)
assert get_orbit_file_from_dir(zip_b, orbit_dir=tmp_path) == str(orbit_b)


def test_orbit_datetime(bursts):
# pad in seconds used in orbit_reader
pad = datetime.timedelta(seconds=60)
Expand Down