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Solution: partial cleanup in xml package.
cd /repo/git/jstl && mvn clean install && cd /repo/git/glassfish-beta && mvn clean install -Pfastest -T4C -Djstl-impl.version=3.0.1-SNAPSHOT && mvn clean install -Ptck -pl :tck-runner -Dit.test=CustomITest -Dtck.module=jstl
Or to run those randomly failing tests directly use
-Dtck.module=jstl/spec/xml/xmlcore/types
Note: I tried to replace the JSTLXPathFactory by the factory from the JDK, but that failed, it needs more work, perhaps later.
TCK results with GlassFish 7.0.0-SNAPSHOT near to M9, commit e821a1a6a86fce6daa06db203bdd7676231bbec7