Releases · khanlab/SPIMprep

What's Changed

build: update actions to perform linting and minimal dry-run testing by @akhanf in #1
feat: made raw_tif_glob redundant for simplicity by @akhanf in #2
Fix: Dimension separator fix, other refactoring by @akhanf in #3
feat: add support for writing omero metadata by @akhanf in #6
fix: actually fix the bug that disabled stitching by @akhanf in #7
fix for tar inputs by @akhanf in #9
renamed spim to SPIM (for BIDS compliance) by @akhanf in #14
Zarr updates by @akhanf in #16
fix: was missing directory() in ome-zarr rule by @akhanf in #18
fix to use work ome-zarr as input for nifti conversion by @akhanf in #22
update workflows by @akhanf in #17
BIDS top-level files and metadata updates by @akhanf in #24
set localrule for anything not in group preproc by @akhanf in #29
fix physical size bug in BIDS metadata by @akhanf in #32
Alternate workflow for data that is already stitched (prestitched) by @akhanf in #33
Add documentation with mkdocs by @akhanf in #36
update to accommodate differing numbers of stains/channels by @akhanf in #39
Update versions of dependencies by @akhanf in #41
Integrate QC report generation into the workflow by @BenGros in #40
Add option to write BIDS directly to cloud storage by @akhanf in #35
Allow for cloud uri (GCS) as input to the pipeline by @akhanf in #42
Move QC outputs to the bids folder by @akhanf in #44
forgot to add new script by @akhanf in #45

Full Changelog: https://github.com/khanlab/SPIMprep/commits/v0.1.0-alpha