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- Changed pipelines to use modisco-lite, old modisco will soon be removed
- Added automatic shift scripts to repo and integrated with the pipeline
- modisco now outputs both html and pdf. pdf can be shared with anyone.
- Use ATAC, DNASE not ATAC_PE, DNASE_SE anymore
- Use ATAC, DNASE not ATAC_PE, DNASE_SE anymore.
- Simplyfing workflows to include only two main workflows, chrombpnet_train_tf_model, chrombpnet_train_bias_model
- Restructuring README, moving tutorial to additional documentation and introducing FAQ, and only two pipelines (chrombpnet_train_tf_model, chrombpnet_train_bias_model)
