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Draft R documentation#4

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tessdverschuuren wants to merge 38 commits intomalariagen:mastermalariagen/grcMalaria:masterfrom tessdverschuuren:concept_documentation(tess)tessdverschuuren/grcMalaria:concept_documentation(tess)Copy head branch name to clipboard

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Commits on May 10, 2022

• correct typo in description file

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Commits on May 11, 2022

• Remove 'Package for..' in Title

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• Corrected typo in description file

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Commits on May 12, 2022

• Add logo to use in man/grcMalaria.Rd

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• added general package information in grcMalaria.Rd

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• adjusted Help page function loadGrc()

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• adjusted help page of function mergeGrc()

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• Adjusted help page for initializeContext() function

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Commits on May 17, 2022

• changed '%' to 'percent'

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• Merge branch 'master' into concept_update_documentation(tess)

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• add mergeGrc.Rd (accidentally removed it previously)

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• update documentation selectSampleSet()

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Commits on May 18, 2022

• Merge commit '3042fc3c9541dd778b450631b2e15acc7b4cbe3b' into concept_documentation(tess)

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• updated documentation man/mapSampleCounts.Rd

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• Update documentation mapDrugResistancePrevalence function

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• modification to give more information about phenotype prediction method in mapDrugResistancePrevalence()

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• Update documentation mapMutationPrevalence function

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• Update documentation mapDiversity function, and corrected typos in other three files

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• update documentation of mapConnections function

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Commits on May 19, 2022

• updated documentation mapMutationPrevalence to desrcibe all mutation types, and refer for functionality of mutations to user guide

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• update documentation function mapBarcodeFrequencies

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• updated documentation on findClusters function

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• updated documentation of plotClusterGraph function, however needs revision. adjusted typo in documentation mapDrugresistancePrevalence.

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• update documentation function mapClusterSharing. adjusted typos in mapBarcodeFrequencies, and plotClutserGraph.

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• update documentation of mapClusterPrevalence function

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Commits on May 23, 2022

• Updated documentation loadGraphicAttributes()

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• Textual addtion of documentation loadGraphicAttributes function

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• Update documentation of plotPrincipalComponents function

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• update documentation of plotTree function. Adjust typo in documentation plotPrincipalComponents function

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• Updated documentation of R/public.R file

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• Updated README.md

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• Update README.md

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Commits on May 25, 2022

• Update public.R

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Commits on Jun 2, 2022

• incorporate comments Varanya

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• Merge commit '6ae4bbb2b9bfa4efa83c1124e577f572cdf17c51' into concept_documentation(tess)

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• Commit again incorporated comments Varanya to R/public.R

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Commits on Jun 6, 2022

• Update public.R

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• Update mapDrugResistancePrevalence.Rd

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