Add support for writing Anopheles SNP data to the plink binary file format (shadow PR) #1298
Workflow file for this run
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| name: tests | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| jobs: | |
| tests: | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| python-version: ["3.10", "3.11", "3.12"] | |
| numpy-version: | |
| - "numpy==1.26.4" # current colab version | |
| - "numpy~=2.0" # 2.0 series | |
| # numba (0.60.0) does not yet support numpy 2.1, disable this for now | |
| # - "numpy~=2.1" # 2.1 series | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout source | |
| uses: actions/checkout@v4 | |
| - name: Setup python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: "pip" | |
| - name: Install package | |
| run: pip install "${{ matrix.numpy-version }}" .[dev] | |
| - name: Run fast unit tests | |
| run: pytest -v tests/anoph --typeguard-packages=malariagen_data,malariagen_data.anoph |