Refactor CNV frequencies functions to their own module #1336

	name: notebooks
	on:
	push:
	branches:
	- master
	pull_request:
	branches:
	- master
	jobs:
	notebooks:
	strategy:
	fail-fast: true
	runs-on: ubuntu-latest
	# Add "id-token" with the intended permissions.
	permissions:
	contents: 'read'
	id-token: 'write'
	steps:
	- name: Checkout source
	uses: actions/checkout@v4

	- name: Install poetry
	run: pipx install poetry==1.8.3

	- name: Setup python
	uses: actions/setup-python@v5
	with:
	python-version: "3.12"
	cache: "poetry"

	- name: Install dependencies
	run: poetry install

	- id: 'auth'
	name: 'Set up Google Cloud authentication'
	uses: 'google-github-actions/auth@v2'
	with:
	credentials_json: '${{ secrets.GOOGLE_CREDENTIALS }}'

	- name: 'Set up Google Cloud SDK'
	uses: 'google-github-actions/setup-gcloud@v2'
	with:
	version: '>= 363.0.0'

	- name: 'Check gcloud CLI'
	run: 'gcloud info'

	- name: Restore GCS cache
	uses: actions/cache/restore@v3
	with:
	path: gcs_cache
	key: gcs_cache_notebooks_20240922

	- name: Run notebooks
	run: poetry run jupyter nbconvert --execute notebooks/*.ipynb --inplace

	- name: Save GCS cache
	uses: actions/cache/save@v3
	if: always()
	with:
	path: gcs_cache
	key: gcs_cache_notebooks_20240922

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