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Refactor CNV frequencies functions to their own module #665

Merged
merged 25 commits into from
Dec 4, 2024
Merged

Refactor CNV frequencies functions to their own module #665

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56e8fff
Moving cnv frequencies functions to their own file
jonbrenas Nov 25, 2024
1950924
Changes that should help with legacy tests
jonbrenas Nov 25, 2024
5750cab
Stuck on creating tests.
jonbrenas Nov 26, 2024
6f6f06e
Adding some tests for CNV freqs
jonbrenas Nov 27, 2024
271aae6
Made the same change as in #668
jonbrenas Nov 27, 2024
9baeeea
Merge branch 'master' into 663-move-cnv-frequencies
jonbrenas Nov 27, 2024
2e35c96
Added check_type
jonbrenas Nov 27, 2024
0248d55
Added a test for max_coverage_variance in the advanced version
jonbrenas Dec 1, 2024
8c7b2c6
Added a test for max_coverage_variance for the normal version
jonbrenas Dec 1, 2024
b174fd6
Merge branch 'master' into 663-move-cnv-frequencies
jonbrenas Dec 2, 2024
337a07c
Merge branch 'master' into 663-move-cnv-frequencies
jonbrenas Dec 2, 2024
4a1eae4
Update malariagen_data/anoph/cnv_frq.py
jonbrenas Dec 3, 2024
e5815c0
Removes the old functions in anopheles.py
jonbrenas Dec 3, 2024
f75818c
Linting
jonbrenas Dec 3, 2024
f87665e
Updated some legacy tests
jonbrenas Dec 3, 2024
7df8d58
Merge branch 'master' into 663-move-cnv-frequencies
jonbrenas Dec 3, 2024
5bce77b
Updated doc, I think
jonbrenas Dec 3, 2024
d8e5274
Merge branch '663-move-cnv-frequencies' of github.com:malariagen/mala…
jonbrenas Dec 3, 2024
ff45a08
Added more tests and a nobs_mode parameter
jonbrenas Dec 3, 2024
cd36509
Merge branch 'master' into 663-move-cnv-frequencies
alimanfoo Dec 3, 2024
c4c84ca
Apply suggestions from code review
alimanfoo Dec 3, 2024
9b4910b
Merge branch 'master' into 663-move-cnv-frequencies
jonbrenas Dec 3, 2024
e3266a5
Finished the merge
jonbrenas Dec 3, 2024
7ceea6f
Removed an unused function in test_ag3.py
jonbrenas Dec 4, 2024
cc936b1
Merge branch 'master' into 663-move-cnv-frequencies
jonbrenas Dec 4, 2024
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