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Prevent sample exclusions during test_plot_frequencies_time_series_with_taxa #672

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Nov 29, 2024
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Prevent sample exclusions during test_plot_frequencies_time_series_with_taxa #672

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6 changes: 2 additions & 4 deletions tests/anoph/test_snp_frq.py
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Original file line number Diff line number Diff line change
Expand Up @@ -1537,7 +1537,6 @@ def test_plot_frequencies_time_series_with_taxa(
all_sample_sets = api.sample_sets()["sample_set"].to_list()
sample_sets = random.choice(all_sample_sets)
site_mask = random.choice(api.site_mask_ids + (None,))
min_cohort_size = random.randint(0, 2)
transcript = random_transcript(api=api).name
area_by = random.choice(["country", "admin1_iso", "admin2_name"])
period_by = random.choice(["year", "quarter", "month"])
Expand All @@ -1555,7 +1554,7 @@ def test_plot_frequencies_time_series_with_taxa(
area_by=area_by,
period_by=period_by,
sample_sets=sample_sets,
min_cohort_size=min_cohort_size,
min_cohort_size=1, # Don't exclude any samples.
site_mask=site_mask,
)

Expand Down Expand Up @@ -1584,7 +1583,6 @@ def test_plot_frequencies_time_series_with_areas(
all_sample_sets = api.sample_sets()["sample_set"].to_list()
sample_sets = random.choice(all_sample_sets)
site_mask = random.choice(api.site_mask_ids + (None,))
min_cohort_size = random.randint(0, 2)
transcript = random_transcript(api=api).name
area_by = random.choice(["country", "admin1_iso", "admin2_name"])
period_by = random.choice(["year", "quarter", "month"])
Expand All @@ -1595,7 +1593,7 @@ def test_plot_frequencies_time_series_with_areas(
area_by=area_by,
period_by=period_by,
sample_sets=sample_sets,
min_cohort_size=min_cohort_size,
min_cohort_size=1, # Don't exclude any samples.
site_mask=site_mask,
)

Expand Down