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Build larch on linux and publish to Anaconda Cloud #7

Build larch on linux and publish to Anaconda Cloud

Build larch on linux and publish to Anaconda Cloud #7

Workflow file for this run

name: Build larch on linux and publish to Anaconda Cloud
on:
workflow_dispatch:
jobs:
conda-publish:
runs-on: ubuntu-latest
environment: conda-publish
steps:
- name: Check out code
uses: actions/checkout@v2
with:
submodules: true
- name: Prepare build environment
run: |
sudo apt-get update
sudo apt-get install build-essential zlib1g-dev python3-pip python3-pytest git git-lfs
- name: Install conda
run: |
curl -L https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh > Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh -b -p ~/miniconda
~/miniconda/bin/conda update -n base -c defaults conda
- name: Create conda env
run: |
source ~/miniconda/etc/profile.d/conda.sh
conda config --prepend channels conda-forge
conda config --prepend channels bioconda
conda config --show channels
conda env create -f environment-dev.yml
- name: Build conda package and upload to Anaconda Cloud
env:
ANACONDA_USER: ${{ vars.ANACONDA_USER }}
ANACONDA_TOKEN: ${{ secrets.ANACONDA_TOKEN }}
ANACONDA_FLAGS: ${{ vars.ANACONDA_FLAGS }}
INCLUDE_TESTS: ${{ vars.INCLUDE_TESTS }}
run: |
source ~/miniconda/etc/profile.d/conda.sh
conda activate larch-dev
export LARCH_VERSION=$(cat ./VERSION)
export INCLUDE_TESTS=${INCLUDE_TESTS}
conda build . --user ${ANACONDA_USER} --token ${ANACONDA_TOKEN} ${ANACONDA_FLAGS}