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added badge and updated version in README
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jgallowa07 committed Jun 23, 2023
1 parent bef5698 commit 6015d42
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5 changes: 4 additions & 1 deletion README.md
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Expand Up @@ -16,8 +16,11 @@ various linux flavors

Launch the pipeline execution with the following command:

nextflow run matsengrp/phip-flow -r V1.09 -profile docker
nextflow run matsengrp/phip-flow -r V1.10 -profile docker

Note: the ``phippery`` [Dockerfile](https://github.com/matsengrp/phippery/blob/main/Dockerfile) contains all the required dependencies.

[![Docker Repository on Quay](https://quay.io/repository/hdc-workflows/phippery/status "Docker Repository on Quay")](https://quay.io/repository/hdc-workflows/phippery)

Add the `-profile docker` to enable the containerized execution to the
example command line shown below.
2 changes: 1 addition & 1 deletion nextflow.config
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Expand Up @@ -104,7 +104,7 @@ params{
process {

// Default for any processes which do not match the selectors below
container = 'quay.io/hdc-workflows/phippery:1.1.4'
container = 'quay.io/hdc-workflows/phippery:1.2.0'

withName: 'run_edgeR|run_BEER' {
container = 'quay.io/biocontainers/bioconductor-beer:1.2.0--r42hdfd78af_0'
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