Skip to content
View mbernste's full-sized avatar
187 followers · 18 following

Achievements

Achievement: Pull SharkAchievement: Arctic Code Vault ContributorAchievement: Starstruck

Achievements

Achievement: Pull SharkAchievement: Arctic Code Vault ContributorAchievement: Starstruck

Organizations

@deweylab @stewart-lab

Block or report mbernste

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse

Pinned Loading

  1. deweylab/MetaSRA-pipeline deweylab/MetaSRA-pipeline Public

    MetaSRA: normalized sample-specific metadata for the Sequence Read Archive

    Python 41 14

  2. deweylab/CellO deweylab/CellO Public

    CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

    Jupyter Notebook 64 13

  3. SpatialCorr SpatialCorr Public

    SpatialCorr: Identify gene sets with spatially varying correlation

    Jupyter Notebook 11 4

  4. SpatialCorr-sim SpatialCorr-sim Public

    SpatialCorr-sim: Simulate spatial transcriptomics data with spatially varying correlation

    Jupyter Notebook 6 1

  5. immunitastx/monkeybread immunitastx/monkeybread Public

    Analyzing cellular niches in spatial transcriptomics data

    Python 27 4

  6. hypothesis-driven-SRA-queries hypothesis-driven-SRA-queries Public

    Find structured-datasets from within the Sequence Read Archive

    Jupyter Notebook 3 1