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Merly Escalona edited this page Feb 14, 2018 · 13 revisions

Here will be a list of the older manual versions:

Wiki

Getting started

Full Manual

  1. About NGSphy
  2. Citation
  3. Input/output files
  4. NGS overage heterogeneity
  5. Installation
    1. Computer requirements
    2. NGSphy
    3. Third-party software
    4. Adding NGSphy and third-party software to the path
  6. Usage
  7. The settings file
    1. general block
    2. data block
    3. coverage block
    4. ngs reads art block
    5. ngs read counts block
    6. execution block
  8. Output
    1. Alignments
    2. Coverage
    3. Ind_labels
    4. Individuals
    5. Ref_alleles
    6. Scripts
    7. NGS mode
    8. Other files
  9. Additional information
    1. Motivation
    2. What can be done with NGSphy?
    3. Third-party software involved
    4. NGSphy workflow
    5. Read count simulation
  10. Getting help
  11. References

Older versions of the manual

Validation test

Use case test

Tutorials

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