add metadata as input when samplesheet

metagenlab · Aug 23, 2024 · 6e8aebe · 6e8aebe
1 parent a0dc44d
commit 6e8aebe
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/zamp/Snakefile b/zamp/Snakefile
@@ -66,6 +66,7 @@ if os.path.isdir(INPUT) and METADATA:
     SAMPLES.set_index("sample", inplace=True)
 elif os.path.isfile(INPUT) and not METADATA:
     SAMPLES = pd.read_csv(INPUT, sep="\t", index_col="sample")
+    METADATA = INPUT
 
 
 # Add read pairing