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# This workflow will upload a Python Package using Twine when a release is created | ||
# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python#publishing-to-package-registries | ||
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# This workflow uses actions that are not certified by GitHub. | ||
# They are provided by a third-party and are governed by | ||
# separate terms of service, privacy policy, and support | ||
# documentation. | ||
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name: Upload Python Package | ||
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on: | ||
release: | ||
types: [published] | ||
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permissions: | ||
contents: read | ||
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jobs: | ||
deploy: | ||
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runs-on: ubuntu-latest | ||
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steps: | ||
- uses: actions/checkout@v3 | ||
- name: Set up Python | ||
uses: actions/setup-python@v3 | ||
with: | ||
python-version: '3.x' | ||
- name: Install dependencies | ||
run: | | ||
python -m pip install --upgrade pip | ||
pip install build | ||
- name: Build package | ||
run: python -m build | ||
- name: Publish package | ||
uses: pypa/gh-action-pypi-publish@27b31702a0e7fc50959f5ad993c78deac1bdfc29 | ||
with: | ||
user: __token__ | ||
password: ${{ secrets.PYPI_API_TOKEN }} |
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name: CI conda | ||
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on: | ||
push: | ||
branches: [ develop ] | ||
pull_request: | ||
branches: [ develop ] | ||
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jobs: | ||
tests: | ||
name: "Python ${{ matrix.python-version }}" | ||
runs-on: ${{ matrix.os }} | ||
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defaults: | ||
run: | ||
shell: bash -el {0} | ||
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strategy: | ||
matrix: | ||
os: [macos-latest, ubuntu-latest] | ||
python-version: ["3.8", "3.9", "3.10", "3.11"] | ||
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steps: | ||
- uses: "actions/checkout@v3" | ||
with: | ||
fetch-depth: 0 | ||
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# Setup conda env | ||
- uses: conda-incubator/setup-miniconda@v3 | ||
with: | ||
activate-environment: graphbin | ||
environment-file: environment.yml | ||
python-version: ${{ matrix.python-version }} | ||
auto-activate-base: false | ||
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- name: "Setup graphbin on ${{ matrix.os }} for Python ${{ matrix.python-version }}" | ||
run: | | ||
python -m pip install --upgrade pip | ||
pip install . | ||
- name: "Generate coverage report on ${{ matrix.os }} for Python ${{ matrix.python-version }}" | ||
run: | | ||
pip install pytest pytest-cov | ||
pytest --cov=graphbin --cov-report=xml --cov-append | ||
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jinja2==3.0.3 | ||
jinja2==3.1.4 | ||
mkdocs>=1.3.1 | ||
babel>=2.9.0 | ||
click>=7.0 | ||
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name: graphbin | ||
channels: | ||
- bioconda | ||
- defaults | ||
- conda-forge | ||
- anaconda | ||
dependencies: | ||
- python>=3.7.1 | ||
- flit | ||
- cairocffi | ||
- python-igraph | ||
- click | ||
- pip | ||
- pip: | ||
- cogent3 | ||
- cairocffi | ||
- python-igraph>=0.7.1 | ||
- cogent3 |
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cogent3 | ||
python-igraph>=0.7.1 | ||
cairocffi | ||
igraph>=0.7.1 | ||
cairocffi | ||
click |
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