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@microgenomics

Microbial Genomics at CBIB

This is the Github site for the Microbial Genomics lab at the CBIB

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  1. tutorials tutorials Public

    In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given that you give proper credit. Have fun!

    Python 81 55

  2. pasteTaxID pasteTaxID Public

    This script take your fastas, search for common IDs (ti, gi, gb, emb), get the ti (or gi if is missing), and finally put the ID's in the same fasta

    Shell 6 3

  3. Workshop-PUC Workshop-PUC Public

    Repositorio para el taller de "Bioinformática: secuenciación masiva y genómica" realizado en la Universidad Católica (sede San Joaquín), Santiago, Chile. Dictado por el Dr. Eduardo Castro-Nallar, C…

    Perl 4 5

  4. plotMyGBK plotMyGBK Public

    Python 3 3

  5. HumanMicrobiomeAnalysis HumanMicrobiomeAnalysis Public

    R Shiny application accompanying the paper (unpublished) Evaluation of Computational Methods for Human Microbiome Analysis Using Simulated Data

    R 3 3

  6. parseMethods parseMethods Public

    Parse Methods Module is a Parse Module from SEPA (a multi pipe to test pathogen software detection), that parses result files from several softwares (pathoscope, metamix, sigma, metaphlan (on devel…

    Shell 2

Repositories

Showing 10 of 13 repositories
  • plotMyGBK Public
    microgenomics/plotMyGBK’s past year of commit activity
    Python 3 3 0 0 Updated Mar 8, 2023
  • HumanMicrobiomeAnalysis Public

    R Shiny application accompanying the paper (unpublished) Evaluation of Computational Methods for Human Microbiome Analysis Using Simulated Data

    microgenomics/HumanMicrobiomeAnalysis’s past year of commit activity
    R 3 3 0 0 Updated Mar 8, 2022
  • pasteTaxID Public

    This script take your fastas, search for common IDs (ti, gi, gb, emb), get the ti (or gi if is missing), and finally put the ID's in the same fasta

    microgenomics/pasteTaxID’s past year of commit activity
    Shell 6 GPL-2.0 3 2 0 Updated Aug 22, 2019
  • MAGnifico Public

    Pipeline for metagenome-associated genome analysis (in development)

    microgenomics/MAGnifico’s past year of commit activity
    Shell 1 1 0 0 Updated Jun 11, 2019
  • tutorials Public

    In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given that you give proper credit. Have fun!

    microgenomics/tutorials’s past year of commit activity
    Python 81 MIT 55 3 0 Updated Apr 1, 2018
  • Workshop-PUC Public

    Repositorio para el taller de "Bioinformática: secuenciación masiva y genómica" realizado en la Universidad Católica (sede San Joaquín), Santiago, Chile. Dictado por el Dr. Eduardo Castro-Nallar, CBIB, Universidad Andres Bello. Mayo 2017

    microgenomics/Workshop-PUC’s past year of commit activity
    Perl 4 GPL-3.0 5 0 0 Updated Sep 20, 2017
  • MicrobiomeAnalysisData Public

    Files accompanying human microbiome analysis protocol

    microgenomics/MicrobiomeAnalysisData’s past year of commit activity
    0 0 0 0 Updated Jul 19, 2017
  • Workshop-UTA Public

    Repositorio para el taller de Bioinformática a realizarse en la Universidad de Tarapacá, Arica, Chile. Dictado por el Dr. Eduardo Castro-Nallar, CBIB, Universidad Andres Bello. Mayo 2017.

    microgenomics/Workshop-UTA’s past year of commit activity
    1 GPL-3.0 0 0 0 Updated May 25, 2017
  • parseMethods Public

    Parse Methods Module is a Parse Module from SEPA (a multi pipe to test pathogen software detection), that parses result files from several softwares (pathoscope, metamix, sigma, metaphlan (on development), constrains (metaphlan dependent))

    microgenomics/parseMethods’s past year of commit activity
    Shell 2 GPL-2.0 0 0 0 Updated Apr 28, 2017
  • analysisMethods Public

    Analysis Methods Module is a final module from SEPA ( a multi pipe to test pathogen software detection), that analyze the cvs file provided by Parse Module (or your own cvs file in particular format), the analysis aviable are R^2, RRMSE (relative error) and ROC Curve

    microgenomics/analysisMethods’s past year of commit activity
    Shell 0 GPL-2.0 0 0 0 Updated Jan 27, 2017
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