MAGnifico is a pipeline in development for the analysis of metagenome-associated genomes.

This pipeline will take in raw reads from metagenomics data. The pipeline will:

• Clean and trim reads
• Assemble reads and map the reads to the generated contigs
• Perform three independent binnings of the reads
• Get consensus bins from the three different softwares
• Evaluate the generated bins
• Select high quality bins and do whole genome phylogeny-based taxonomical identification.