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PR addressing Issue #24 #226

Merged
merged 6 commits into from
Dec 13, 2022
Merged

PR addressing Issue #24 #226

merged 6 commits into from
Dec 13, 2022

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Max-Bladen
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Derives from closed and depreciated PR (#198).

Mostly the same implementation, such that:

  • plotIndiv.mint.pls() given functionality to process background.predict objects. Included adjusting way in which X and Y axes limits are calculated to ensure polygons show
  • mean_centering_per_study() adjusted to add the global scaled:center and scaled:scale attributes to output.
  • internal_graphicModule() had the if (style == "ggplot2-MINT") updated to include background polygons in plotIndiv() figures.
  • documentation and SemVer updated.

Commits and commit messages were redone too.

@Max-Bladen Max-Bladen added the enhancement-request New feature or request label Aug 1, 2022
@Max-Bladen Max-Bladen self-assigned this Aug 1, 2022
@Max-Bladen Max-Bladen linked an issue Aug 1, 2022 that may be closed by this pull request
@Max-Bladen Max-Bladen added the ready-to-review for all PRs that are ready to be reviewed. including complex, larger commits label Sep 22, 2022
@Max-Bladen Max-Bladen added enhancement-implementation for PR's that address an Issue with 'enhancement' label and removed enhancement-request New feature or request labels Nov 28, 2022
@Max-Bladen Max-Bladen changed the title Fix for Issue #24 Bug Fix, Issue #24 Nov 28, 2022
@Max-Bladen Max-Bladen changed the title Bug Fix, Issue #24 PR addressing Issue #24 Nov 28, 2022
enhance: adding the functionality required in `plotIndiv.mint.pls()` in order to handle and use output from `background.predict()`.

Involves adding parameter and correctly adjusting limits of plot to accommodate polygons
enhance: moved the definitions of global attributes `scaled:center` and `scaled:scale` out of `else` statement prevent it's usage
fix: adjust minor error in f81cacf. extremes of background polygons is now correctly calculated
enhance: copied code segment used by this function and added it to `style == "ggplot2-MINT"`
docs: SemVer updated and `plotIndiv()` documentation updated
test: add test for `plotIndiv` on MINT object with background. maintains coverage
@Max-Bladen
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Second set of commits on 13/12/2022 reflect initial set of commits, but replicated after the branch was rebased to master following PR #281.

@Max-Bladen Max-Bladen merged commit 143d31f into master Dec 13, 2022
@Max-Bladen Max-Bladen deleted the issue-24 branch December 13, 2022 21:53
@Max-Bladen Max-Bladen removed the ready-to-review for all PRs that are ready to be reviewed. including complex, larger commits label Dec 13, 2022
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Add background.predict support for mint.splsda
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