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PR addressing Issue #248 #249

Merged
merged 5 commits into from
Dec 13, 2022
Merged

PR addressing Issue #248 #249

merged 5 commits into from
Dec 13, 2022

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Max-Bladen
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A simple PR to bring the functionality of circosPlot() to all block objects. Previously, it could only be supplied block.spls(da) objects. Now this also includes block.pls(da) objects (ie. non-sparse block methods)

@Max-Bladen Max-Bladen added the enhancement-request New feature or request label Sep 27, 2022
@Max-Bladen Max-Bladen self-assigned this Sep 27, 2022
@Max-Bladen Max-Bladen linked an issue Sep 27, 2022 that may be closed by this pull request
@Max-Bladen Max-Bladen added rapid-review for PRs which will take minimal time to review and close ready-to-review for all PRs that are ready to be reviewed. including complex, larger commits labels Sep 27, 2022
@Max-Bladen Max-Bladen added enhancement-implementation for PR's that address an Issue with 'enhancement' label and removed enhancement-request New feature or request labels Nov 28, 2022
@Max-Bladen Max-Bladen changed the title Enhancement for Issue #248 Enhancement Implementation, Issue #248 Nov 28, 2022
@Max-Bladen Max-Bladen changed the title Enhancement Implementation, Issue #248 PR addressing Issue #248 Nov 28, 2022
refactor: added aliases for circosPlot to take `block.pls` and `block.plsda` objects
fix: changed object class check
fix: adjusted first check in `circosPlot()`. Needs to apply changes to any DA object otherwise there are downstream errors.

Errors were caused by mismatch of length between `X` and `object$variates`
docs: updated `circosPlot()` docs with changed to `object` parameter
@Max-Bladen
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Second set of commits on 13/12/2022 reflect initial set of commits, but replicated after the branch was rebased to master following PR #281.

docs: needed to compile documentation to synchronise `circosPlot` parameters
@Max-Bladen Max-Bladen merged commit fcf1379 into master Dec 13, 2022
@Max-Bladen Max-Bladen deleted the issue-248 branch December 13, 2022 21:29
@Max-Bladen Max-Bladen removed rapid-review for PRs which will take minimal time to review and close ready-to-review for all PRs that are ready to be reviewed. including complex, larger commits labels Dec 13, 2022
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circosPlot() doesn't function on block.pls(da) objects
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