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show disease context qualifier #855

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merged 2 commits into from
Oct 17, 2024
Merged

show disease context qualifier #855

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4c42ee6
Show disease context qualifier column only for human g2p, also only s…
kevinschaper Oct 17, 2024
5117639
Make disease context qualifier a link, drive by cleanup of 'already o…
kevinschaper Oct 17, 2024
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2 changes: 1 addition & 1 deletion frontend/src/components/AppNodeBadge.vue
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Original file line number Diff line number Diff line change
Expand Up @@ -88,7 +88,7 @@ const info = computed(() =>
const isLink = computed(() => {
/** make sure we're already on page we're linking to */
return (
!window.location.pathname.endsWith("/node/" + (props.node.id || "")) &&
!window.location.pathname.endsWith("/" + (props.node.id || "")) &&
/** make sure id is a valid curie */
!!props.node.id?.match(/^\w/)
);
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29 changes: 25 additions & 4 deletions frontend/src/pages/node/AssociationsTable.vue
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Original file line number Diff line number Diff line change
Expand Up @@ -80,7 +80,17 @@
: row.subject_taxon_label
}}
</template>

<template #disease_context="{ row }">
<AppNodeBadge
v-if="row.disease_context_qualifier"
:node="{
id: row.disease_context_qualifier,
name: row.disease_context_qualifier_label,
category: 'biolink:Disease',
}"
/>
<span v-else class="empty">No info</span>
</template>
<!-- phenotype specific -->
<!-- no template needed because info just plain text -->

Expand Down Expand Up @@ -210,15 +220,25 @@ const cols = computed((): Cols<Datum> => {

/** taxon column. exists for many categories, so just add if any row has taxon. */
if (
associations.value.items.some(
(item) => item.subject_taxon_label || item.object_taxon_label,
)
props.category.id.includes("GeneToGeneHomology") ||
props.category.id.includes("Interaction")
)
extraCols.push({
slot: "taxon",
heading: "Taxon",
});

if (
props.node.in_taxon_label == "Homo sapiens" &&
props.category.id.includes("GeneToPhenotypicFeature")
) {
extraCols.push({
slot: "disease_context",
key: "disease_context_qualifier",
heading: "Disease Context",
sortable: true,
});
}
/** phenotype specific columns */
if (props.category.id.includes("PhenotypicFeature")) {
extraCols.push(
Expand All @@ -235,6 +255,7 @@ const cols = computed((): Cols<Datum> => {
},
);
}

//include original subject and call it Source for D2P
if (props.category.id.includes("DiseaseToPhenotypicFeature")) {
extraCols.push({
Expand Down