remove spacy dependancy in pyproject.toml

[madanucd]

Related issues

• Closes Spacy git dependency breaks pypi deploy #809

Summary

This PR addresses dependency issues with monarch-py deployment to PyPI, fixing errors caused by direct dependencies on external URLs for spacy en_core_sci_sm model.

• Utilized pystow to download and cache the en_core_sci_sm model from an S3 URL.

• Implemented automatic unpacking and dynamic directory identification to ensure the model is properly extracted and loaded.

Checks

• All annotation backend tests were checked and successfully passed.
• Completed testing of the API development environment to ensure proper integration.

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[codecov]

Codecov Report

Attention: Patch coverage is 77.41935% with 14 lines in your changes missing coverage. Please review.

Project coverage is 71.17%. Comparing base (af5ab7b) to head (c675d60).

Files with missing lines	Patch %	Lines
...h_py/implementations/spacy/spacy_implementation.py	61.76%	13 Missing ⚠️
backend/tests/integration/test_solr_association.py	0.00%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #913      +/-   ##
==========================================
+ Coverage   71.14%   71.17%   +0.02%     
==========================================
  Files          91       91              
  Lines        3136     3167      +31     
==========================================
+ Hits         2231     2254      +23     
- Misses        905      913       +8     

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[ptgolden]

Hey @madanucd, are there any substantial changes in those last three commits? I think you may not have pulled from main before making the PR, which made all changes after 838436e a little wonky (they revert all commits from the last month or so). If there aren't changes that aren't semantically meaningful for this PR/issue, I'll cherry pick 838436e and update poetry.lock from its HEAD state in main.

[madanucd]

Hi @ptgolden

The only updates in this branch are to the following files:

• backend/src/monarch_py/implementations/spacy/spacy_implementation.py
• pyproject.toml

The poetry.lock file was updated due to changes in pyproject.toml.

Merging main into issue-809-dependency-update seems to have flagged multiple files as modified, even though only the files listed above were intentionally updated. This discrepancy might create unnecessary confusion. After reverting the aforementioned merge commit, I did not encounter any build failures or conflicts. That said, I ensured my main branch was up to date before creating this branch.

If cherry-picking the relevant commit works better for you, please feel free to proceed. Alternatively, I can create a clean branch and submit a new PR to ensure clarity, deleting this branch and the current PR. Please let me know how.

[ptgolden]

Strange- the parent commit of 838436e is 793cd1c from 10/21 (the lock file has diverged since then). I am happy to make a new PR cherry picking 838436e and updating poetry.lock from its current state, if that's OK with you.

[madanucd]

Strange- the parent commit of 838436e is 793cd1c from 10/21 (the lock file has diverged since then). I am happy to make a new PR cherry picking 838436e and updating poetry.lock from its current state, if that's OK with you.

That's fine with me. Thank you!

[ptgolden]

New PR in #920 👍