Update Externally Provided Content #1

	name: Update Externally Provided Content

	on:
	# schedule:
	# - cron: '0 14 * * 1'
	workflow_dispatch:

	jobs:
	build:
	runs-on: ubuntu-latest
	container: obolibrary/odkfull:v1.5.2

	steps:
	- name: Checkout main branch
	uses: actions/checkout@v3
	with:
	ref: automate-external-content

	- name: Update Externally Provided Content
	run: \|
	cd src/ontology
	make GITHUB_ACTION=true IMP=false PAT=false update-external-content -B

	# This is important if we are out of sync between Mondo and Mondo Ingest:
	# We need to eventually add a check to ensure that no subclass axioms have been added or removed
	# We should consider to create a seperate curation workflows with a table with previously supported and now not anymore supported subclass axioms
	- name: QC to ensure that nothing other than provenance has changed
	run: \|
	cd src/ontology
	make GITHUB_ACTION=true IMP=false PAT=false qc -B

	- name: Run ontology QC checks
	env:
	DEFAULT_BRANCH: master
	run: cd src/ontology; make GITHUB_ACTION=true IMP=false PAT=false test_owlaxioms -B

	- name: Create Pull Request
	uses: peter-evans/create-pull-request@v5
	with:
	branch-suffix: short-commit-hash
	labels: Automated
	body: "Update the externally managed content."
	title: "Externally managed content update"
	base: ${{ github.head_ref }}
	branch: "externally_managed_content"
	token: ${{ secrets.GH_TOKEN }}
	reviewers: "matentzn"

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