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Naturalis #52

Merged
merged 38 commits into from
Nov 26, 2024
Merged

Naturalis #52

merged 38 commits into from
Nov 26, 2024

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rvosa
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@rvosa rvosa commented Nov 26, 2024

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@rvosa and others added 30 commits November 6, 2024 13:23
YAML and CSV are optional
…t word of the fasta definition line. The process ID is attached to the record under sequence.annotations[bcdm_fields][processid]
…cess ID as a separate member of the return tuple, but rather attaches it to the sequence under sequence.annotations[bcdm_fields][processid]
…cess ID as a separate member of the return tuple, but rather attaches it to the sequence under sequence.annotations[bcdm_fields][processid]. Also, both the structural validation and the taxonomic validation now both receive a result object that they modify.
…D as a separate member of the return tuple, but rather attaches it to the sequence under sequence.annotations[bcdm_fields][processid]. Also, both the structural validation and the taxonomic validation now both receive a result object that they modify.
… ID. Also has getters/setters for the fasta file name ('dataset'). Separate handling of 'level' is now handled by 'identification_rank'. The column headers are managed such that they can be flushed from one result set to the next.
…etically we could now validate different records at different precision levels.
@rvosa rvosa merged commit de89ceb into main Nov 26, 2024
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