[ENH] Refactored directory and module names (#26)

* Refactored directory and module names

* Refactor api_construction to api

README.md

@@ -21,7 +21,7 @@
 
 - run python file
   ```
-  python3 -m app.api.get_apiURL
+  python3 -m app.api.url_generator
   ```
 
 

app/api/get_apiURL.py → app/api/url_generator.py

@@ -1,18 +1,18 @@
 import json
-from app.LLM_extractions.extractions import extract_information
-from app.api.validations import (
+from app.llm_processing.extractions import extract_information
+from app.api.validators import (
     validate_age_order,
     validate_diagnosis_and_control,
 )
-from app.fetch_termURLs.get_termURLs import (
+from app.term_url_processing.term_url_mapper import (
     get_diagnosis_termURL,
     get_assessment_termURL,
     get_sex_termURL,
     get_image_modality_termURL,
 )
 
 
-def getApiURL(user_query: str) -> str:
+def get_api_url(user_query: str) -> str:
     """
     Constructs the API URL using extracted parameters from the user's query.
 
@@ -131,6 +131,6 @@ def getApiURL(user_query: str) -> str:
         if user_query.lower() == "exit":
             break
 
-        api_url = getApiURL(user_query)
+        api_url = get_api_url(user_query)
         print("Response:", api_url)
         print("")

app/fetch_termURLs/__init__.py → app/term_url_processing/abbreviations/__init__.py

@@ -3,4 +3,4 @@
 
 sys.path.append(
     os.path.dirname(os.path.realpath(__file__))
-)  # Fixes relative import error.
+)  # Fixes relative import error.

app/fetch_termURLs/get_termURLs.py → app/term_url_processing/term_url_mapper.py

@@ -1,7 +1,7 @@
 import requests
 from typing import Optional, Dict, Any
 import difflib
-from termURL_mappings import (
+from term_url_mappings import (
     sex_mapping,
     diagnosis_url,
     assessment_url,

tests/test_extractions.py

@@ -2,7 +2,7 @@
 import warnings
 from typing import Dict
 from unittest.mock import patch
-from app.LLM_extractions.extractions import extract_information, main
+from app.llm_processing.extractions import extract_information, main
 
 
 @pytest.mark.parametrize(

tests/test_get_termURLs.py → tests/test_term_url_mapper.py

@@ -2,7 +2,7 @@
 from requests.exceptions import RequestException
 from unittest.mock import patch
 from typing import List, Dict
-from app.fetch_termURLs.get_termURLs import (
+from app.term_url_processing.term_url_mapper import (
     fetch_termURL_mappings,
     get_diagnosis_termURL,
     get_assessment_termURL,
@@ -85,7 +85,7 @@ def test_get_diagnosis_termURL(diagnosis: str, expected_termURL: str) -> None:
     }
 
     with patch(
-        "app.fetch_termURLs.get_termURLs.fetch_termURL_mappings",
+        "app.term_url_processing.term_url_mapper.fetch_termURL_mappings",
         return_value=mock_diagnosis_response,
     ):
         diagnosis_termURL = get_diagnosis_termURL(diagnosis)
@@ -125,7 +125,7 @@ def test_get_assessment_termURL(
     }
 
     with patch(
-        "app.fetch_termURLs.get_termURLs.fetch_termURL_mappings",
+        "app.term_url_processing.term_url_mapper.fetch_termURL_mappings",
         return_value=mock_assessment_response,
     ):
         assessment_termURL = get_assessment_termURL(assessment)
@@ -176,7 +176,7 @@ def test_get_image_modality_termURL(
     ]
 
     with patch(
-        "app.fetch_termURLs.get_termURLs.image_modality_mapping",
+        "app.term_url_processing.term_url_mapper.image_modality_mapping",
         mock_image_modality_response,
     ):
         image_modality_termURL = get_image_modality_termURL(image_modality)

tests/test_get_apiURL.py → tests/test_url_generator.py

@@ -1,6 +1,6 @@
 import pytest
 from unittest.mock import patch
-from app.api.get_apiURL import getApiURL
+from app.api.url_generator import get_api_url
 
 # Define the mock responses for diagnosis and assessment term URLs
 mock_diagnosis_mappings = {
@@ -67,18 +67,18 @@
     ],
 )
 @patch(
-    "app.api.get_apiURL.get_diagnosis_termURL",
+    "app.api.url_generator.get_diagnosis_termURL",
     side_effect=lambda diagnosis: mock_diagnosis_mappings.get(
         diagnosis, "None"
     ),
 )
 @patch(
-    "app.api.get_apiURL.get_assessment_termURL",
+    "app.api.url_generator.get_assessment_termURL",
     side_effect=lambda assessment: mock_assessment_mappings.get(
         assessment, "None"
     ),
 )
-def test_getApiURL(
+def test_get_api_url(
     mock_get_diagnosis_termURL,
     mock_get_assessment_termURL,
     user_query,
@@ -87,12 +87,12 @@ def test_getApiURL(
     expected_output,
 ):
     with patch(
-        "app.api.get_apiURL.extract_information",
+        "app.api.url_generator.extract_information",
         return_value=mock_llm_response,
     ):
         if mock_input_side_effect is not None:
             with patch("builtins.input", side_effect=mock_input_side_effect):
-                result = getApiURL(user_query)
+                result = get_api_url(user_query)
         else:
-            result = getApiURL(user_query)
+            result = get_api_url(user_query)
         assert result == expected_output

tests/test_validations.py → tests/test_validators.py

@@ -1,6 +1,6 @@
 import pytest
 from unittest.mock import patch
-from app.api.validations import (
+from app.api.validators import (
     validate_age_order,
     validate_diagnosis_and_control,
 )