Sidenotes

deps.edn

@@ -8,7 +8,7 @@
         weavejester/dependency {:mvn/version "0.2.1"}
         com.nextjournal/beholder {:mvn/version "1.0.0"}
 
-        io.github.nextjournal/markdown {:mvn/version "0.4.135"}
+        io.github.nextjournal/markdown {:mvn/version "0.4.138"}
         io.github.nextjournal/dejavu {:git/sha "4980e0cc18c9b09fb220874ace94ba6b57a749ca"}
 
         com.taoensso/nippy {:mvn/version "3.2.0"}

notebooks/markdown.md

@@ -1,6 +1,6 @@
 # $\mathfrak{M}\!⬇$ Markdown Ingestion
 
-This notebook demoes feeding Clerk with markdown files. We currently make no assumption on the kind of source code passed in fenced blocks, we handle code as if it were clojure. Indented code blocks are treated as inert code blocks.  
+This notebook demoes feeding Clerk with markdown files. We currently make no assumption on the kind of source code passed in fenced blocks[^fenced], we handle code as if it were clojure. Indented code blocks are treated as inert code blocks.  
 
 ```clj
 ^:nextjournal.clerk/no-cache
@@ -22,9 +22,9 @@ Nextjournal Markdown library is able to ingest a markdown string
 (def parsed (md/parse markdown-input))
 ```
 
-At present, Clerk will split top level forms which are grouped together under the same cell, this is to guarantee that Clerk's dependency analysys among forms will still effectively avoid needless recomputations when code changes.
+At present, Clerk will split top level forms which are grouped together under the same cell, this is to guarantee that Clerk's dependency analysys among forms will still effectively avoid needless recomputations^[when code changes].
 
-which you can manipulate with your favourite clojure functions
+Parsed markdown is a tree of regular Cloure data structures[^data] which you can manipulate with your favourite clojure functions
 
 ```clojure
 (def sliced (update parsed :content #(take 8 %))) ;; take just a slice 
@@ -52,3 +52,6 @@ and finally render via Clerk's `html` helper.
 ## Appendix
 
 Don't forget the closing slice 🍕 of markdown!
+
+[^fenced]: E.g. blocks delimited by 3 consecutive backticks.
+[^data]: maps and vectors.

notebooks/viewers/markdown.clj

@@ -33,13 +33,13 @@ It's [Markdown](https://daringfireball.net/projects/markdown/), like you know it
 ;; > — Special Forms
 
 ;; ## Sidenotes
-
-;; One of the most distinctive features of Tufte’s style is his extensive use
-;; of sidenotes [^sidenote]. This is a sidenote. Sidenotes are like footnotes,
+;;
+;; One of the most distinctive features of Tufte’s style is his _extensive use
+;; of sidenotes_[^sidenote]. Sidenotes are like footnotes,
 ;; except they don’t force the reader to jump their eye to the bottom of the
 ;; page, but instead display off to the side in the margin. Perhaps you have
-;; noticed their use in this document already. You are very astute.
-;; 
+;; noticed their use in this document already^[If you are _astute_ enough!]. You are very astute.
+;;
 ;; [^sidenote]: This is a sidenote. The purpose of this text is to
 ;; merely demonstrate the use of sidenotes. All text was originally published
 ;; on the [Tufte CSS website](https://edwardtufte.github.io/tufte-css/).
@@ -66,17 +66,22 @@ It's [Markdown](https://daringfireball.net/projects/markdown/), like you know it
 ;; new content width once a sidenote is present in the document:
 ;;
 ;; Things to do:
+
 ;; * Hire two private investigators. Get them to follow each other.
-;; * Wear t-shirt that says "Life". Hand out lemons on street corner.
+;; * Wear t-shirt that says "Life". Hand out lemons^[not oranges] on street corner.
+;;   * Wear t-shirt that says "Life". Hand out lemons^[not oranges] on street corner.
 ;; * Change name to Simon. Speak in thirs person.
 ;; * Major in philosophy. Ask people WHY they would like fries with that.
 
+(clerk/md "---")
 
-
-
-
-
-
-
-
-
+;; ### Conclusion^[what usually average folks actually read.]
+;; Sidenote references should not be resetted[^crossnote] across code blocks.
+;;
+;; | Tables   |     Are  |  Cool |
+;; |----------|:---------|------:|
+;; | col 2 is | left[^*] |  1600 |
+;; | col 3 is |  right   |    12 |
+;;
+;; [^crossnote]: as in: _1-based_ again.
+;; [^*]: as in _not right_.

package.json

@@ -21,7 +21,7 @@
     "lezer-clojure": "1.0.0-rc.2",
     "markdown-it": "^12.2.0",
     "markdown-it-block-image": "^0.0.3",
-    "markdown-it-sidenote": "gerwitz/markdown-it-sidenote#aa5de8ce3168b7d41cb33c3aed071a5f41ce0083",
+    "markdown-it-footnote": "^3.0.3",
     "markdown-it-texmath": "^0.9.1",
     "markdown-it-toc-done-right": "^4.2.0",
     "punycode": "2.1.1",

resources/stylesheets/viewer.css

@@ -285,7 +285,7 @@
 
 .viewer-notebook { @apply py-16; }
 #clerk-static-app .viewer-notebook { @apply pt-[0.8rem] pb-16; }
-.viewer-markdown *:first-child:not(.viewer-code):not(li):not(h2) { @apply mt-0; }
+.viewer-markdown *:first-child:not(.viewer-code):not(li):not(h2):not(.sidenote) { @apply mt-0; }
 /*.viewer + .viewer { @apply mt-6; }*/
 .viewer + .viewer-result { @apply mt-0; }
 .viewer-code + .viewer-result { @apply mt-3; }
@@ -298,22 +298,32 @@
   @apply top-[-0.5em] w-auto h-auto inline border-0 bg-transparent m-0 pointer-events-none;
 }
 .sidenote {
-    @apply block w-full float-left clear-both relative font-sans text-xs my-4 bg-slate-100 dark:bg-slate-800 p-4;
-    font-style: normal;
-    font-weight: normal;
+  @apply block font-sans text-xs mt-4 bg-slate-100 dark:bg-slate-800 p-4;
+  font-style: normal;
+  font-weight: normal;
+}
+.sidenote-container {
+  @apply mb-4;
 }
 @media (min-width: 860px) {
   .sidenote sup { @apply inline; }
+  .sidenote-column {
+    @apply w-[165px] absolute right-0 top-0 -mr-[205px];
+  }
   .sidenote {
-    @apply -mt-[20px] w-[165px] float-right clear-right absolute right-0 p-0 bg-transparent dark:bg-transparent;
+    @apply bg-transparent dark:bg-transparent p-0;
+  }
+  .sidenote:first-child {
+    @apply mt-1;
+  }
+  .sidenotes-layout .viewer-markdown {
+    @apply pr-[205px];
+  }
+  .sidenote-container {
+    @apply relative mb-0;
   }
-  .sidenotes-layout .viewer-markdown p,
-  .sidenotes-layout .viewer-markdown ul,
-  .sidenotes-layout .viewer-markdown ol,
-  .sidenotes-layout .viewer-markdown h2,
-  .sidenotes-layout .viewer-markdown h3,
-  .sidenotes-layout .viewer-markdown h4 {
-      @apply relative pr-[205px];
+  .sidenotes-layout h1 {
+    @apply w-[756px] !important;
   }
 }
 .viewer-code + .viewer:not(.viewer-markdown):not(.viewer-code):not(.viewer-code-folded),

src/nextjournal/clerk/parser.cljc

@@ -246,7 +246,7 @@
         (assoc :md-context doc)
         (update :blocks conj {:type :markdown
                               :doc (-> doc
-                                       (select-keys [:type :content :sidenotes?])
+                                       (select-keys [:type :content :footnotes])
                                        ;; take only new nodes, keep context intact
                                        (update :content subvec (inc index)))}))))
 
@@ -255,7 +255,7 @@
   ([{:as opts :keys [doc?]} s]
    (let [doc (parse-clojure-string opts {:blocks [] :md-context (markdown-context)} s)]
      (select-keys (cond-> doc doc? (merge (:md-context doc)))
-                  [:blocks :title :toc :sidenotes?])))
+                  [:blocks :title :toc :footnotes])))
   ([{:as _opts :keys [doc?]} initial-state s]
    (loop [{:as state :keys [nodes blocks add-comment-on-line?]} (assoc initial-state :nodes (:children (p/parse-string-all s)))]
      (if-let [node (first nodes)]
@@ -315,7 +315,7 @@
             (update :blocks #(cond-> % (seq md-slice) (conj {:type :markdown :doc {:type :doc :content md-slice}})))
             (select-keys [:blocks :visibility])
             (merge (when doc?
-                     (select-keys ctx [:sidenotes? :title :toc]))))))))
+                     (select-keys ctx [:footnotes :title :toc]))))))))
 
 #_(parse-markdown-string {:doc? true} "# Hello\n```\n1\n;; # 1️⃣ Hello\n2\n\n```\nhey\n```\n3\n;; # 2️⃣ Hello\n4\n```\n")
 

src/nextjournal/clerk/viewer.cljc

@@ -18,6 +18,7 @@
                        [sci.lang]
                        [applied-science.js-interop :as j]])
             [nextjournal.markdown :as md]
+            [nextjournal.markdown.parser :as md.parser]
             [nextjournal.markdown.transform :as md.transform])
   #?(:clj (:import (com.pngencoder PngEncoder)
                    (clojure.lang IDeref IAtom)
@@ -499,9 +500,14 @@
 #_(->display {:result {:nextjournal.clerk/visibility {:code :fold :result :show}}})
 #_(->display {:result {:nextjournal.clerk/visibility {:code :fold :result :hide}}})
 
+(defn process-sidenotes [{:as doc :keys [footnotes]} cell-doc]
+  (if (seq footnotes)
+    (md.parser/insert-sidenote-containers (assoc cell-doc :footnotes footnotes))
+    cell-doc))
+
 (defn with-block-viewer [doc {:as cell :keys [type]}]
   (case type
-    :markdown [(with-viewer :markdown (:doc cell))]
+    :markdown [(with-viewer :markdown (process-sidenotes doc (:doc cell)))]
     :code (let [cell (update cell :result apply-viewer-unwrapping-var-from-def)
                 {:as display-opts :keys [code? result?]} (->display cell)
                 eval? (-> cell :result :nextjournal/value (get-safe :nextjournal/value) viewer-eval?)]
@@ -607,8 +613,7 @@
 
 (def markdown-viewers
   [{:name :nextjournal.markdown/doc
-    :transform-fn (into-markup (fn [{:keys [sidenotes?]}]
-                                 [(keyword (str "div.viewer-markdown" (when sidenotes? ".contains-sidenotes")))]))}
+    :transform-fn (into-markup [:div.viewer-markdown])}
 
    ;; blocks
    {:name :nextjournal.markdown/heading
@@ -668,10 +673,13 @@
    {:name :nextjournal.markdown/toc :transform-fn (into-markup [:div.toc])}
 
    ;; sidenotes
+   {:name :nextjournal.markdown/sidenote-container :transform-fn (into-markup [:div.sidenote-container])}
+   {:name :nextjournal.markdown/sidenote-column :transform-fn (into-markup [:div.sidenote-column])}
    {:name :nextjournal.markdown/sidenote
-    :transform-fn (into-markup (fn [{:keys [attrs]}] [:span.sidenote [:sup {:style {:margin-right "3px"}} (-> attrs :ref inc)]]))}
+    :transform-fn (into-markup (fn [{:keys [ref]}]
+                                 [:span.sidenote [:sup {:style {:margin-right "3px"}} (str (inc ref))]]))}
    {:name :nextjournal.markdown/sidenote-ref
-    :transform-fn (into-markup [:sup.sidenote-ref])}])
+    :transform-fn (fn [wrapped-value] (with-viewer :html [:sup.sidenote-ref (-> wrapped-value ->value :ref inc)]))}])
 
 (def char-viewer
   {:pred char? :render-fn '(fn [c] [:span.cmt-string.inspected-value "\\" c])})
@@ -972,10 +980,10 @@
                     :blocks :bundle?
                     :css-class
                     :open-graph
-                    :sidenotes?
                     :title
                     :toc
                     :toc-visibility])
+      (assoc :sidenotes? (boolean (seq (:footnotes doc))))
       #?(:clj (cond-> ns (assoc :scope (datafy-scope ns))))))
 
 (def notebook-viewer

test/nextjournal/clerk/parser_test.clj

@@ -33,6 +33,7 @@
                                     {:type :markdown, :doc {:type :doc :content [{:type :heading}]}}
                                     {:type :code, :text "{2 \"bar\" 1 \"foo\"}"},]
                            :title "📶 Sorting",
+                           :footnotes []
                            :toc {:type :toc,
                                  :children [{:type :toc :children [{:type :toc}
                                                                    {:type :toc}]}]}})

yarn.lock

@@ -754,9 +754,10 @@ markdown-it-block-image@^0.0.3:
   resolved "https://registry.yarnpkg.com/markdown-it-block-image/-/markdown-it-block-image-0.0.3.tgz#d3fe650ebf2215ea2c7afb577b394e5f7ffc12ca"
   integrity sha512-+esbdLegMSWmIRGwVncj5ZwVi5K1qt894uXfnkZIyMFC7ssbv7aR7YEVI16w0PdFWow1HmBNUZ4chl0vScjoIA==
 
-markdown-it-sidenote@gerwitz/markdown-it-sidenote#aa5de8ce3168b7d41cb33c3aed071a5f41ce0083:
-  version "0.2.0"
-  resolved "https://codeload.github.com/gerwitz/markdown-it-sidenote/tar.gz/aa5de8ce3168b7d41cb33c3aed071a5f41ce0083"
+markdown-it-footnote@^3.0.3:
+  version "3.0.3"
+  resolved "https://registry.yarnpkg.com/markdown-it-footnote/-/markdown-it-footnote-3.0.3.tgz#e0e4c0d67390a4c5f0c75f73be605c7c190ca4d8"
+  integrity sha512-YZMSuCGVZAjzKMn+xqIco9d1cLGxbELHZ9do/TSYVzraooV8ypsppKNmUJ0fVH5ljkCInQAtFpm8Rb3eXSrt5w==
 
 markdown-it-texmath@^0.9.1:
   version "0.9.7"