Adds rest of the genes for gene coverage columns #1053
Workflow file for this run
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name: CI | |
on: | |
- push | |
- pull_request | |
jobs: | |
pathogen-ci: | |
strategy: | |
matrix: | |
runtime: [docker, conda] | |
permissions: | |
id-token: write | |
uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@master | |
secrets: inherit | |
with: | |
runtime: ${{ matrix.runtime }} | |
run: | | |
nextstrain build \ | |
phylogenetic \ | |
--configfile profiles/ci/profiles_config.yaml | |
artifact-name: output-${{ matrix.runtime }} | |
artifact-paths: | | |
phylogenetic/auspice/ | |
phylogenetic/results/ | |
phylogenetic/benchmarks/ | |
phylogenetic/logs/ | |
phylogenetic/.snakemake/log/ |