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Standardize nextclade dataset names (#65)
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@j23414
j23414 authored Jun 7, 2024
1 parent ea326b0 commit 9597544
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2 changes: 1 addition & 1 deletion nextclade/datasets/all/README.md
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| Key | Value |
| :-- | :-- |
| name | Dengue (serotype-level) |
| name | Dengue virus All serotypes |
| authors | [Nextstrain](https://nextstrain.org) |
| reference | NC_002640.1 |
| workflow | https://github.com/nextstrain/dengue/tree/main/nextclade |
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2 changes: 1 addition & 1 deletion nextclade/datasets/denv1/README.md
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| Key | Value |
| :-- | :-- |
| name | Dengue virus DENV1 (genotype-level) |
| name | Dengue virus DENV1 genotypes |
| authors | [Nextstrain](https://nextstrain.org) |
| reference | NC_001477.1 |
| workflow | https://github.com/nextstrain/dengue/tree/main/nextclade |
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2 changes: 1 addition & 1 deletion nextclade/datasets/denv1/pathogen.json
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"minLength": 1000
},
"attributes": {
"name": "Dengue virus DENV1",
"name": "Dengue virus DENV1 genotypes",
"reference accession": "NC_001477",
"reference name": "NC_001477"
},
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2 changes: 1 addition & 1 deletion nextclade/datasets/denv2/README.md
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| Key | Value |
| :-- | :-- |
| name | Dengue virus DENV2 (genotype-level) |
| name | Dengue virus DENV2 genotypes |
| authors | [Nextstrain](https://nextstrain.org) |
| reference | NC_001474.2 |
| workflow | https://github.com/nextstrain/dengue/tree/main/nextclade |
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2 changes: 1 addition & 1 deletion nextclade/datasets/denv2/pathogen.json
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"minLength": 1000
},
"attributes": {
"name": "Dengue virus DENV2",
"name": "Dengue virus DENV2 genotypes",
"reference accession": "NC_001474",
"reference name": "NC_001474"
},
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2 changes: 1 addition & 1 deletion nextclade/datasets/denv3/README.md
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Expand Up @@ -2,7 +2,7 @@ k# Dengue virus DENV3 dataset

| Key | Value |
| :-- | :-- |
| name | Dengue virus DENV3 (genotype-level) |
| name | Dengue virus DENV3 genotypes |
| authors | [Nextstrain](https://nextstrain.org) |
| reference | NC_001475.2 |
| workflow | https://github.com/nextstrain/dengue/tree/main/nextclade |
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2 changes: 1 addition & 1 deletion nextclade/datasets/denv3/pathogen.json
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"minLength": 1000
},
"attributes": {
"name": "Dengue virus DENV3",
"name": "Dengue virus DENV3 genotypes",
"reference accession": "NC_001475",
"reference name": "NC_001475"
},
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2 changes: 1 addition & 1 deletion nextclade/datasets/denv4/README.md
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| Key | Value |
| :-- | :-- |
| name | Dengue virus DENV4 (genotype-level) |
| name | Dengue virus DENV4 genotypes |
| authors | [Nextstrain](https://nextstrain.org) |
| reference | NC_002640.1 |
| workflow | https://github.com/nextstrain/dengue/tree/main/nextclade |
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2 changes: 1 addition & 1 deletion nextclade/datasets/denv4/pathogen.json
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"minLength": 1000
},
"attributes": {
"name": "Dengue virus DENV4",
"name": "Dengue virus DENV4 genotypes",
"reference accession": "NC_002640",
"reference name": "NC_002640"
},
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2 changes: 1 addition & 1 deletion nextclade/resources/all/README.md
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| Key | Value |
| :-- | :-- |
| name | Dengue (serotype-level) |
| name | Dengue virus All serotypes |
| authors | [Nextstrain](https://nextstrain.org) |
| reference | NC_002640.1 |
| workflow | https://github.com/nextstrain/dengue/tree/main/nextclade |
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2 changes: 1 addition & 1 deletion nextclade/resources/denv1/README.md
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Expand Up @@ -2,7 +2,7 @@

| Key | Value |
| :-- | :-- |
| name | Dengue virus DENV1 (genotype-level) |
| name | Dengue virus DENV1 genotypes |
| authors | [Nextstrain](https://nextstrain.org) |
| reference | NC_001477.1 |
| workflow | https://github.com/nextstrain/dengue/tree/main/nextclade |
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2 changes: 1 addition & 1 deletion nextclade/resources/denv1/pathogen.json
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"minLength": 1000
},
"attributes": {
"name": "Dengue virus DENV1",
"name": "Dengue virus DENV1 genotypes",
"reference accession": "NC_001477",
"reference name": "NC_001477"
},
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2 changes: 1 addition & 1 deletion nextclade/resources/denv2/README.md
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| Key | Value |
| :-- | :-- |
| name | Dengue virus DENV2 (genotype-level) |
| name | Dengue virus DENV2 genotypes |
| authors | [Nextstrain](https://nextstrain.org) |
| reference | NC_001474.2 |
| workflow | https://github.com/nextstrain/dengue/tree/main/nextclade |
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2 changes: 1 addition & 1 deletion nextclade/resources/denv2/pathogen.json
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"minLength": 1000
},
"attributes": {
"name": "Dengue virus DENV2",
"name": "Dengue virus DENV2 genotypes",
"reference accession": "NC_001474",
"reference name": "NC_001474"
},
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2 changes: 1 addition & 1 deletion nextclade/resources/denv3/README.md
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Expand Up @@ -2,7 +2,7 @@ k# Dengue virus DENV3 dataset

| Key | Value |
| :-- | :-- |
| name | Dengue virus DENV3 (genotype-level) |
| name | Dengue virus DENV3 genotypes |
| authors | [Nextstrain](https://nextstrain.org) |
| reference | NC_001475.2 |
| workflow | https://github.com/nextstrain/dengue/tree/main/nextclade |
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2 changes: 1 addition & 1 deletion nextclade/resources/denv3/pathogen.json
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"minLength": 1000
},
"attributes": {
"name": "Dengue virus DENV3",
"name": "Dengue virus DENV3 genotypes",
"reference accession": "NC_001475",
"reference name": "NC_001475"
},
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2 changes: 1 addition & 1 deletion nextclade/resources/denv4/README.md
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| Key | Value |
| :-- | :-- |
| name | Dengue virus DENV4 (genotype-level) |
| name | Dengue virus DENV4 genotypes |
| authors | [Nextstrain](https://nextstrain.org) |
| reference | NC_002640.1 |
| workflow | https://github.com/nextstrain/dengue/tree/main/nextclade |
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2 changes: 1 addition & 1 deletion nextclade/resources/denv4/pathogen.json
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"minLength": 1000
},
"attributes": {
"name": "Dengue virus DENV4",
"name": "Dengue virus DENV4 genotypes",
"reference accession": "NC_002640",
"reference name": "NC_002640"
},
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