fixup: drop description file from nextclade pipeline, unrendered

nextstrain · Jun 28, 2024 · d4c965c · d4c965c
1 parent b901302
commit d4c965c
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Showing 2 changed files with 0 additions and 5 deletions.
diff --git a/nextclade/config/config_dengue.yaml b/nextclade/config/config_dengue.yaml
@@ -51,6 +51,3 @@ clades:
     denv2: 'config/clades_genotypes_denv2.tsv'
     denv3: 'config/clades_genotypes_denv3.tsv'
     denv4: 'config/clades_genotypes_denv4.tsv'
-
-export:
-  description: "../phylogenetic/config/description.md"
diff --git a/nextclade/rules/export.smk b/nextclade/rules/export.smk
@@ -139,7 +139,6 @@ rule export:
         clades = lambda wildcard: "results/{gene}/clades_{serotype}.json" if wildcard.gene in ['genome'] else [],
         nt_muts = "results/{gene}/nt-muts_{serotype}.json",
         aa_muts = "results/{gene}/aa-muts_{serotype}.json",
-        description = config["export"]["description"],
         auspice_config = "results/config/{gene}/auspice_config_{serotype}.json",
         colors = "results/colors_{serotype}.tsv",
     output:
@@ -154,7 +153,6 @@ rule export:
             --metadata-id-columns {params.strain_id} \
             --node-data {input.branch_lengths} {input.traits} {input.clades} {input.nt_muts} {input.aa_muts} \
             --colors {input.colors} \
-            --description {input.description} \
             --auspice-config {input.auspice_config} \
             --include-root-sequence-inline \
             --output {output.auspice_json}