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Add the SQLite CLI for augur merge
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Ideally this would have been added before or as Augur 25.3.0—the first
version to include `augur merge`—was packaged into this runtime, but I
plain forgot.
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tsibley committed Sep 4, 2024
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Expand Up @@ -367,6 +367,7 @@ SHELL ["/bin/bash", "-e", "-u", "-o", "pipefail", "-c"]
# libsqlite3: for pyfastx (for Augur)
# perl: for running VCFtools
# ruby: may be used by workflows
# sqlite3: for `augur merge`
# wget: may be used by workflows
# zlib1g: for pyfastx (for Augur)
# nodejs: for running Auspice
Expand All @@ -383,6 +384,7 @@ RUN apt-get update && apt-get install -y --no-install-recommends \
libsqlite3-0 \
perl \
ruby \
sqlite3 \
util-linux \
wget \
xz-utils \
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